miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00722;mir-451;BX548073.8/159677-159748 7955:Danio rerio
(zebrafish)
Length = 72
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 agaggcggcgaaaccgttaccattactgagtttagtaatggtaagggttctgctgccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 agaggcggcgaaaccgttaccattactgagtttagtaatggtaagggttctgctgccttt 66
>RF00722;mir-451;ABQF01026376.1/875-804 59729:Taeniopygia guttata
Length = 72
Score = 83.8 bits (42), Expect = 2e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 4 ggcggcgaaaccgttaccattactgagtttagtaatggtaagggttctgc 53
||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttctgc 59
>RF00722;mir-451;AADN02025858.1/509-580 9031:Gallus gallus
(chicken)
Length = 72
Score = 83.8 bits (42), Expect = 2e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 10 gaaaccgttaccattactgagtttagtaatggtaagggttctgctg 55
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16 gaaaccgttaccattactgagtttagtaatggtaacggttctgctg 61
>RF00722;mir-451;AAFR03044825.1/5420-5349 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 79.8 bits (40), Expect = 3e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 4 ggcggcgaaaccgttaccattactgagtttagtaatggtaagggttct 51
||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10 ggcggggaaaccgttaccattactgtgtttagtaatggtaagggttct 57
>RF00722;mir-451;BAAF04033966.1/3754-3826 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 79.8 bits (40), Expect = 3e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 11 aaaccgttaccattactgagtttagtaatggtaagggttc 50
||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 aaaccgttaccattactgagtttagtaatggtaagggttc 56
>RF00722;mir-451;AAPN01323131.1/127-56 9258:Ornithorhynchus
anatinus (platypus)
Length = 72
Score = 75.8 bits (38), Expect = 5e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 10 gaaaccgttaccattactgagtttagtaatggtaagggttct 51
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 16 gaaaccgttaccattactgagtttagtaatggtaacggttct 57
>RF00722;mir-451;AAGU02141945.1/2025-1955 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 71.9 bits (36), Expect = 8e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 12 aaccgttaccattactgagtttagtaatggtaagggttct 51
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17 aaccgttaccattactgagtttagtaatggtaatggttct 56
>RF00722;mir-451;ABQO010853698.1/772-701 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 10 gaaaccgttaccattactgagtttagtaatggtaagggttct 51
||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 16 gaaaccgttaccattactgtgtttagtaatggtaacggttct 57
>RF00722;mir-451;AAKN02033337.1/59671-59742 10141:Cavia porcellus
(domestic guinea pig)
Length = 72
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 10 gaaaccgttaccattactgagtttagtaatggtaagggttct 51
||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 16 gaaaccgttaccattactgagtttagtaatggtgacggttct 57
>RF00722;mir-451;CAAB01000931.1/60591-60519 31033:Takifugu
rubripes
Length = 73
Score = 58.0 bits (29), Expect = 1e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 11 aaaccgttaccattactgagttt-agtaatggtaagggttc 50
||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggttc 57
>RF00722;mir-451;AANH01000562.1/126354-126425 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 72
Score = 56.0 bits (28), Expect = 5e-08
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 11 aaaccgttaccattactgagttt-agtaatggtaagggtt 49
||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggtt 56
