miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31557_oan-mir-454:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 74 gagtagtgcaatattgctaatagggttttag 104
|||||||||||||||||| ||||||||||||
Sbjct: 53 gagtagtgcaatattgcttatagggttttag 83
>27916_mml-mir-454:mirbase
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gttcagagtagtgcaatattgctaatagggtttt 102
|||| |||||||||||||||||| ||||||||||
Sbjct: 56 gttctgagtagtgcaatattgcttatagggtttt 89
>28664_hsa-mir-454:mirbase
Length = 115
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gttcagagtagtgcaatattgctaatagggtttt 102
|||| |||||||||||||||||| ||||||||||
Sbjct: 56 gttctgagtagtgcaatattgcttatagggtttt 89
>30385_ptr-mir-454:mirbase
Length = 114
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gttcagagtagtgcaatattgctaatagggtttt 102
|||| |||||||||||||||||| ||||||||||
Sbjct: 56 gttctgagtagtgcaatattgcttatagggtttt 89
>26852_cfa-mir-454:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 gagtagtgcaatattgctaatagggtttt 102
|||||||||||||||||| ||||||||||
Sbjct: 41 gagtagtgcaatattgcttatagggtttt 69
>27187_eca-mir-454:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 gagtagtgcaatattgctaatagggtttt 102
|||||||||||||||||| ||||||||||
Sbjct: 41 gagtagtgcaatattgcttatagggtttt 69
>33386_bta-mir-454:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 74 gagtagtgcaatattgctaatagggtttt 102
|||||||||||||||||| ||||||||||
Sbjct: 60 gagtagtgcaatattgcttatagggtttt 88
>34475_dre-mir-454b:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 6e-06
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 36 gaccctatcagtattgcctctgctgtccactgtgttca--gagtagtgcaatattgctaa 93
|||||||||| ||||||||||||| | | | |||| | |||||||||||||||||| |
Sbjct: 23 gaccctatcaatattgcctctgcttttctcactgtttatggagtagtgcaatattgctta 82
Query: 94 tagggt 99
||||||
Sbjct: 83 tagggt 88
>26031_gga-mir-454:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 agtagtgcaatattgctaatagggt 99
||||||||||||||||| |||||||
Sbjct: 70 agtagtgcaatattgcttatagggt 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 36 gaccctatcagtattgcctctgct 59
|||||||||| |||||||||||||
Sbjct: 32 gaccctatcaatattgcctctgct 55
>26533_tgu-mir-454:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 agtagtgcaatattgctaatagggt 99
||||||||||||||||| |||||||
Sbjct: 39 agtagtgcaatattgcttatagggt 63
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 36 gaccctatcagtattgcctctgct 59
|||||||||| |||||||||||||
Sbjct: 1 gaccctatcaatattgcctctgct 24
