miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00746;mir-454;AC091299.2/31120-31004 7955:Danio rerio (zebrafish)
Length = 117
Score = 224 bits (113), Expect = 2e-58
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 12 ttgagaattaatcctaattcttgggaccctatcagtattgcctctgctgtccactgtgtt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgagaattaatcctaattcttgggaccctatcagtattgcctctgctgtccactgtgtt 60
Query: 72 cagagtagtgcaatattgctaatagggttttaggttttaggttgtaccttcag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagagtagtgcaatattgctaatagggttttaggttttaggttgtaccttcag 113
>RF00746;mir-454;ABRQ01507750.1/1602-1488 9813:Procavia capensis
(cape rock hyrax)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 69 gttcagagtagtgcaatattgctaatagggttttag 104
|||| |||||||||||||||||| ||||||||||||
Sbjct: 56 gttctgagtagtgcaatattgcttatagggttttag 91
>RF00746;mir-454;AAFR03045417.1/66257-66371 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 75 agtagtgcaatattgctaatagggttttaggtttt 109
||||||||||||||||| |||||||||||| ||||
Sbjct: 62 agtagtgcaatattgcttatagggttttagttttt 96
>RF00746;mir-454;AANH01010010.1/101669-101555 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 cagagtagtgcaatattgctaatagggt 99
|||||||||||||||||||| |||||||
Sbjct: 61 cagagtagtgcaatattgcttatagggt 88
>RF00746;mir-454;AAVX01021344.1/1948-2058 7868:Callorhinchus milii
(ghost shark)
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 gagtagtgcaatattgctaatagggttt 101
|||||||||||||||||| |||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggttt 88
>RF00746;mir-454;BX957246.7/151285-151170 7955:Danio rerio
(zebrafish)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 36 gaccctatcagtattgcctctgctgtccactgtgttca--gagtagtgcaatattgctaa 93
|||||||||| ||||||||||||| | | | |||| | |||||||||||||||||| |
Sbjct: 23 gaccctatcaatattgcctctgcttttctcactgtttatggagtagtgcaatattgctta 82
Query: 94 tagggt 99
||||||
Sbjct: 83 tagggt 88
>RF00746;mir-454;CAAB01003137.1/22509-22626 31033:Takifugu
rubripes
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 36 gaccctatcagtattgcctctgctgtccactgtgttcag--agtagtgcaatattgctaa 93
|||||||||| | ||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 23 gaccctatcaatgttgcctctgctttcacatgtgttcactcagtagtgcaatattgctta 82
Query: 94 tagggt 99
||||||
Sbjct: 83 tagggt 88
