miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26031_gga-mir-454:mirbase
Length = 121
Score = 61.9 bits (31), Expect = 1e-10
Identities = 63/72 (87%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 21 gagaccctatcaatattgcctctgcttttctcactgtttatgg-agtagtgcaatattgc 79
||||||||||||||||||||||||||||| || | | || ||||||||||||||||
Sbjct: 30 gagaccctatcaatattgcctctgctttt----gtgctcagggtagtagtgcaatattgc 85
Query: 80 ttatagggtctt 91
||||||||||||
Sbjct: 86 ttatagggtctt 97
>26533_tgu-mir-454:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 23 gaccctatcaatattgcctctgcttttctcactgtttatgg-agtagtgcaatattgctt 81
||||||||||||||||||||||||||| | | | | || ||||||||||||||||||
Sbjct: 1 gaccctatcaatattgcctctgcttttgtga----tcagggtagtagtgcaatattgctt 56
Query: 82 atagggtctt 91
||||||||||
Sbjct: 57 atagggtctt 66
>26852_cfa-mir-454:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 41 gagtagtgcaatattgcttatagggt 66
>27187_eca-mir-454:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 41 gagtagtgcaatattgcttatagggt 66
>27916_mml-mir-454:mirbase
Length = 115
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggt 86
>28664_hsa-mir-454:mirbase
Length = 115
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggt 86
>30385_ptr-mir-454:mirbase
Length = 114
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggt 86
>31557_oan-mir-454:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 53 gagtagtgcaatattgcttatagggt 78
>33386_bta-mir-454:mirbase
Length = 114
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 60 gagtagtgcaatattgcttatagggt 85
>34474_dre-mir-454a:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 6e-06
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 23 gaccctatcaatattgcctctgcttttctcactgtttatggagtagtgcaatattgctta 82
|||||||||| ||||||||||||| | | | |||| | |||||||||||||||||| |
Sbjct: 36 gaccctatcagtattgcctctgctgtccactgtgttca--gagtagtgcaatattgctaa 93
Query: 83 tagggt 88
||||||
Sbjct: 94 tagggt 99
