miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00746;mir-454;BX957246.7/151285-151170 7955:Danio rerio
(zebrafish)
Length = 116
Score = 230 bits (116), Expect = 3e-60
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 gataaatgcatcttgcaggcgagaccctatcaatattgcctctgcttttctcactgttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gataaatgcatcttgcaggcgagaccctatcaatattgcctctgcttttctcactgttta 60
Query: 61 tggagtagtgcaatattgcttatagggtcttgactttaaggctaatctgcaatatc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggagtagtgcaatattgcttatagggtcttgactttaaggctaatctgcaatatc 116
>RF00746;mir-454;AADN02034763.1/4411-4297 9031:Gallus gallus
(chicken)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 63/72 (87%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 21 gagaccctatcaatattgcctctgcttttctcactgtttatgg-agtagtgcaatattgc 79
||||||||||||||||||||||||||||| || | | || ||||||||||||||||
Sbjct: 18 gagaccctatcaatattgcctctgctttt----gtgctcagggtagtagtgcaatattgc 73
Query: 80 ttatagggtctt 91
||||||||||||
Sbjct: 74 ttatagggtctt 85
>RF00746;mir-454;AANH01010010.1/101669-101555 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 115
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggtcttg 92
||||||||||||||||||||||||||||||
Sbjct: 63 gagtagtgcaatattgcttatagggtcttg 92
>RF00746;mir-454;CAAB01003137.1/22509-22626 31033:Takifugu
rubripes
Length = 118
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 64 agtagtgcaatattgcttatagggtcttg 92
|||||||||||||||||||||||||||||
Sbjct: 64 agtagtgcaatattgcttatagggtcttg 92
>RF00746;mir-454;AAWZ01024587.1/22473-22587 28377:Anolis
carolinensis (green anole)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 64 agtagtgcaatattgcttatagggtctt 91
||||||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggtctt 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 agaccctatcaatattgcctctgctt 47
||||||||||||||||||||||||||
Sbjct: 22 agaccctatcaatattgcctctgctt 47
>RF00746;mir-454;ABRQ01507750.1/1602-1488 9813:Procavia capensis
(cape rock hyrax)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggt 86
>RF00746;mir-454;AAVX01021344.1/1948-2058 7868:Callorhinchus milii
(ghost shark)
Length = 111
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 gagtagtgcaatattgcttatagggt 88
||||||||||||||||||||||||||
Sbjct: 61 gagtagtgcaatattgcttatagggt 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 gaccctatcaatattgcctctgcttt 48
||||||||| ||||||||||||||||
Sbjct: 23 gaccctatcgatattgcctctgcttt 48
>RF00746;mir-454;AAFR03045417.1/66257-66371 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 agtagtgcaatattgcttatagggt 88
|||||||||||||||||||||||||
Sbjct: 62 agtagtgcaatattgcttatagggt 86
>RF00746;mir-454;BAAE01186103.1/68-179 8090:Oryzias latipes
(Japanese medaka)
Length = 112
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 agtagtgcaatattgcttatagggt 88
|||||||||||||||||||||||||
Sbjct: 63 agtagtgcaatattgcttatagggt 87
>RF00746;mir-454;AC091299.2/31120-31004 7955:Danio rerio
(zebrafish)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 23 gaccctatcaatattgcctctgcttttctcactgtttatggagtagtgcaatattgctta 82
|||||||||| ||||||||||||| | | | |||| | |||||||||||||||||| |
Sbjct: 25 gaccctatcagtattgcctctgctgtccactgtgttca--gagtagtgcaatattgctaa 82
Query: 83 tagggt 88
||||||
Sbjct: 83 tagggt 88
