miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26032_gga-mir-455:mirbase
Length = 86
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>26033_gga-mir-455:mirbase
Length = 86
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>25863_xtr-mir-455:mirbase
Length = 87
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>27917_mml-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>27918_mml-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>28665_hsa-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>28666_hsa-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>31017_ppy-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>31018_ppy-mir-455:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>33387_bta-mir-455:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaaggccta 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaaggccta 89
>34653_fru-mir-455:mirbase
Length = 84
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 2 ccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 tgggcatatacacttgcctca 82
|||||||||||||||||||||
Sbjct: 61 tgggcatatacacttgcctca 81
>30386_ptr-mir-455:mirbase
Length = 95
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 2 ccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 61
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctggcgtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 tgggcatatacacttgcctcaaggccta 89
||||||||||||||||||||||||||||
Sbjct: 61 tgggcatatacacttgcctcaaggccta 88
>27453_mdo-mir-455:mirbase
Length = 87
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tccctggcgtgagggtatgtgcccttggactacatcgtggaagccaacaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctcaagg 85
|||||||||||||||||||||||||
Sbjct: 61 atgggcatatacacttgcctcaagg 85
>34801_tni-mir-455:mirbase
Length = 84
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 2 ccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctgatgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcca 60
Query: 62 tgggcatatacacttgcctcaagg 85
||||||||||||||| ||||||||
Sbjct: 61 tgggcatatacactttcctcaagg 84
>34103_ssc-mir-455:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 9 gtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcat 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgagggtatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcat 64
Query: 69 atacacttgcctcaag 84
||||||||||||||||
Sbjct: 65 atacacttgcctcaag 80
>26534_tgu-mir-455:mirbase
Length = 71
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 13 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatatac 60
Query: 73 acttgcctcaa 83
|||||||||||
Sbjct: 61 acttgcctcaa 71
>34477_dre-mir-455b:mirbase
Length = 105
Score = 121 bits (61), Expect = 1e-28
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 9 gtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcat 68
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 17 gtgagggtatgtgcccttggactacattgtggaggccagcaccatgcagtccatgggcat 76
Query: 69 atacacttgcctcaaggccta 89
|||||||| | ||| ||||||
Sbjct: 77 atacacttacttcatggccta 97
>32920_rno-mir-455:mirbase
Length = 78
Score = 109 bits (55), Expect = 4e-25
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 ggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtccatggg 65
|||||||| ||||||||| ||||||||||||||||| || |||||||||||||||| |||
Sbjct: 1 ggtgtgagcgtatgtgcctttggactacatcgtggacgc-agcaccatgcagtccacggg 59
Query: 66 catatacacttgcctcaag 84
|||||||||||||||||||
Sbjct: 60 catatacacttgcctcaag 78
>26853_cfa-mir-455:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 16 tatgtgcccttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 73
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatgtgcctttggactacatcgtggaagccagcaccatgcagtccatgggcatataca 58
>32088_mmu-mir-455:mirbase
Length = 82
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tccctggtgtgagggtatgtgcccttggactacatcgtggaagccagcaccatgcagtcc 60
||||||||||||| ||||||||| ||||||||||||||| | || |||||||||||||||
Sbjct: 2 tccctggtgtgagcgtatgtgcctttggactacatcgtgaacgc-agcaccatgcagtcc 60
Query: 61 atgggcatatacacttgcctca 82
| ||||||||||||||||||||
Sbjct: 61 acgggcatatacacttgcctca 82
