miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00878;mir-456;BX004877.10/47607-47503 7955:Danio rerio
(zebrafish)
Length = 105
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gctggttgtgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gctggttgtgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctg 70
Query: 61 gttagatggttgtcacgtacccagc 85
|||||||||||||||||||||||||
Sbjct: 71 gttagatggttgtcacgtacccagc 95
>RF00878;mir-456;BAAF04097110.1/5066-4963 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 9 tgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctggttagatg 68
|||| ||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||
Sbjct: 18 tgtgagcaggcatcttcccagcctacatgtagatccagccgtctgcaggctggttagatg 77
Query: 69 gttgtcac 76
||||||||
Sbjct: 78 gttgtcac 85
>RF00878;mir-456;AAWZ01005369.1/34970-35074 28377:Anolis
carolinensis (green anole)
Length = 105
Score = 65.9 bits (33), Expect = 8e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 tgtgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctggttaga 66
|||||| ||||||||||| ||| |||||||||||| | | |||||||||||||||||
Sbjct: 17 tgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttaga 76
Query: 67 tggttgtca 75
|||||||||
Sbjct: 77 tggttgtca 85
>RF00878;mir-456;ABQF01042287.1/70108-70005 59729:Taeniopygia
guttata
Length = 104
Score = 65.9 bits (33), Expect = 8e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 tgtgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctggttaga 66
|||||| ||||||||||| ||| |||||||||||| | | |||||||||||||||||
Sbjct: 16 tgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttaga 75
Query: 67 tggttgtca 75
|||||||||
Sbjct: 76 tggttgtca 84
>RF00878;mir-456;AADN02011847.1/76016-76127 9031:Gallus gallus
(chicken)
Length = 112
Score = 65.9 bits (33), Expect = 8e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 tgtgtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctggttaga 66
|||||| ||||||||||| ||| |||||||||||| | | |||||||||||||||||
Sbjct: 24 tgtgtgagcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttaga 83
Query: 67 tggttgtca 75
|||||||||
Sbjct: 84 tggttgtca 92
