miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26035_gga-mir-458:mirbase
Length = 116
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 gtgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaa 60
|||||||| |||||||||||| ||||||||||| || | | ||||||||||||||||||
Sbjct: 19 gtgcagatggcagcgccattttcagagctataaacagcgtcattgtcatagctctttgaa 78
Query: 61 tggtactgccatatg 75
|||||||||||||||
Sbjct: 79 tggtactgccatatg 93
>31558_oan-mir-458:mirbase
Length = 117
Score = 85.7 bits (43), Expect = 4e-18
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 gtgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaa 60
|||||||| |||||||||||| ||||||||||| || || ||| ||||||||||||||
Sbjct: 21 gtgcagatggcagcgccattttcagagctataaacagtatcattgccatagctctttgaa 80
Query: 61 tggtactgccatatg 75
|||||||||||||||
Sbjct: 81 tggtactgccatatg 95
>34654_fru-mir-458:mirbase
Length = 75
Score = 58.0 bits (29), Expect = 9e-10
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 2 tgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaat 61
|||||| ||||||||||||| ||||||||| || ||| || ||||||||||||| |||
Sbjct: 1 tgcagacagcagcgccattttcagagctatcag--tcaacgtggtcatagctctttaaat 58
Query: 62 ggtactgc 69
||||||||
Sbjct: 59 ggtactgc 66
>26536_tgu-mir-458:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 43 ttgtcatagctctttgaatggtactgccatatgcac 78
|||||||||||||| ||||||| |||||||| ||||
Sbjct: 44 ttgtcatagctcttggaatggttctgccataagcac 79
>34802_tni-mir-458:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 9e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 gtgcagatagcagcgccatttacagagctat 31
||||||| |||||||||||| |||||||||
Sbjct: 1 gtgcagacggcagcgccattttcagagctat 31
