miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00750;mir-458;BX322629.8/12571-12494 7955:Danio rerio
(zebrafish)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 gtgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaa 60
Query: 61 tggtactgccatatgcac 78
||||||||||||||||||
Sbjct: 61 tggtactgccatatgcac 78
>RF00750;mir-458;AADN02066998.1/215-292 9031:Gallus gallus
(chicken)
Length = 78
Score = 93.7 bits (47), Expect = 3e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 gtgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaa 60
|||||||| |||||||||||| ||||||||||| || | | ||||||||||||||||||
Sbjct: 1 gtgcagatggcagcgccattttcagagctataaacagcgtcattgtcatagctctttgaa 60
Query: 61 tggtactgccatatg 75
|||||||||||||||
Sbjct: 61 tggtactgccatatg 75
>RF00750;mir-458;CAAB01001761.1/10078-10153 31033:Takifugu
rubripes
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 2 tgcagatagcagcgccatttacagagctataagcatcatagttgtcatagctctttgaat 61
|||||| ||||||||||||| ||||||||| || ||| || ||||||||||||| |||
Sbjct: 2 tgcagacagcagcgccattttcagagctatcag--tcaacgtggtcatagctctttaaat 59
Query: 62 ggtactgc 69
||||||||
Sbjct: 60 ggtactgc 67
>RF00750;mir-458;AANH01006599.1/90205-90129 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 10 gcagcgccatttacagagctataagcatcatagttgtcatagctctttgaatggtactgc 69
|||||||||||| |||||||||||| | | ||| ||||||||||||| |||||||||||
Sbjct: 10 gcagcgccattttcagagctataagtgtga-agtggtcatagctctttaaatggtactgc 68
Query: 70 c 70
|
Sbjct: 69 c 69
>RF00750;mir-458;ABQF01020326.1/152-229 59729:Taeniopygia guttata
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 43 ttgtcatagctctttgaatggtactgccatatgcac 78
|||||||||||||| ||||||| |||||||| ||||
Sbjct: 43 ttgtcatagctcttggaatggttctgccataagcac 78
