miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34484_dre-mir-460:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 ctcctcggctcctgcattgtacacactgtgcggaaaacatggacatgcacagcgcataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcctcggctcctgcattgtacacactgtgcggaaaacatggacatgcacagcgcataca 60
Query: 61 atgtggatgctgtggag 77
|||||||||||||||||
Sbjct: 61 atgtggatgctgtggag 77
>26036_gga-mir-460a:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 cctgcattgtacacactgtgcg-gaaaacatggacatgcacagcgcatacaatgtggatg 69
|||||||||||||||||||| | | ||| |||| ||||||||||||||||||||||||
Sbjct: 15 cctgcattgtacacactgtgtgtgttaac-tggaaatgcacagcgcatacaatgtggatt 73
Query: 70 ctgt 73
||||
Sbjct: 74 ctgt 77
>34655_fru-mir-460:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 gcacagcgcatacaatgtggatgctgtg 74
||||||||||||||||||||||||||||
Sbjct: 42 gcacagcgcatacaatgtggatgctgtg 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcctgcattgtacacactgtgc 31
||||||||||||||||||||||
Sbjct: 5 tcctgcattgtacacactgtgc 26
>34803_tni-mir-460:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 gcacagcgcatacaatgtggatgctgtg 74
||||||||||||||||||||||||||||
Sbjct: 42 gcacagcgcatacaatgtggatgctgtg 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcctgcattgtacacactgtgc 31
||||||||||||||||||||||
Sbjct: 5 tcctgcattgtacacactgtgc 26
>26537_tgu-mir-460a:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 40 tggacatgcacagcgcatacaatgtggatgctgt 73
|||| |||||||||||||||||||||||| ||||
Sbjct: 39 tggaaatgcacagcgcatacaatgtggattctgt 72
>27454_mdo-mir-460:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 catgcacagcgcatacaatgtggat 68
|||||||||||||||||||||||||
Sbjct: 47 catgcacagcgcatacaatgtggat 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cctgcattgtacacactgtg 30
||||||||||||||||||||
Sbjct: 15 cctgcattgtacacactgtg 34
>31559_oan-mir-460:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 cctgcattgtacacactgtg 30
||||||||||||||||||||
Sbjct: 14 cctgcattgtacacactgtg 33
