miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00712;mir-460;AL929518.16/147724-147648 7955:Danio rerio
(zebrafish)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 ctcctcggctcctgcattgtacacactgtgcggaaaacatggacatgcacagcgcataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcctcggctcctgcattgtacacactgtgcggaaaacatggacatgcacagcgcataca 60
Query: 61 atgtggatgctgtggag 77
|||||||||||||||||
Sbjct: 61 atgtggatgctgtggag 77
>RF00712;mir-460;AADN02000191.1/14140-14216 9031:Gallus gallus
(chicken)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 cctgcattgtacacactgtgcg-gaaaacatggacatgcacagcgcatacaatgtggatg 69
|||||||||||||||||||| | | ||| |||| ||||||||||||||||||||||||
Sbjct: 11 cctgcattgtacacactgtgtgtgttaac-tggaaatgcacagcgcatacaatgtggatt 69
Query: 70 ctgt 73
||||
Sbjct: 70 ctgt 73
>RF00712;mir-460;AJ550897.1/27759-27835 31033:Takifugu rubripes
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 gcacagcgcatacaatgtggatgctgtg 74
||||||||||||||||||||||||||||
Sbjct: 47 gcacagcgcatacaatgtggatgctgtg 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcctgcattgtacacactgtgc 31
||||||||||||||||||||||
Sbjct: 10 tcctgcattgtacacactgtgc 31
>RF00712;mir-460;BAAF04038357.1/1620-1696 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 gcacagcgcatacaatgtggatgctgtg 74
||||||||||||||||||||||||||||
Sbjct: 47 gcacagcgcatacaatgtggatgctgtg 74
>RF00712;mir-460;AAWZ01036331.1/1691-1615 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tgcacagcgcatacaatgtggatgct 71
||||||||||||||||||||||||||
Sbjct: 46 tgcacagcgcatacaatgtggatgct 71
>RF00712;mir-460;AAFR03030363.1/8341-8416 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 catgcacagcgcatacaatgtggat 68
|||||||||||||||||||||||||
Sbjct: 43 catgcacagcgcatacaatgtggat 67
