miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00698;mir-489;BAAE01010852.1/933-843 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 149 bits (75), Expect = 8e-36
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 11 gtggtggcctggtggtcgtatgtatgacgtcatttacttcaaagtttggagtgacatcat 70
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 3 gtggtggcctggtggtcgtatgtatgacgtcatttacttcgatgcttggagtgacatcat 62
Query: 71 atgtacggctgctaaactgctacatgg 97
|||||||||||||||||||||||||||
Sbjct: 63 atgtacggctgctaaactgctacatgg 89
>RF00698;mir-489;AAWZ01021558.1/191255-191164 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 95.6 bits (48), Expect = 1e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 15 tggcctggtggtcgtatgtatgacgtcatttacttcaaagttt-ggagtgacatcatatg 73
|||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 7 tggcttggtggtcgtatgtatgacgtcatttacttgttcttttaggagtgacatcatatg 66
Query: 74 tacggctgctaaactgctacatgg 97
||||||||||||||||| ||||||
Sbjct: 67 tacggctgctaaactgccacatgg 90
>RF00698;mir-489;ABVD01342338.1/2688-2597 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 59 gagtgacatcatatgtacggctgctaaactgctacatgg 97
||||||||||| || ||||| |||||||||||||||||
Sbjct: 52 gagtgacatcacatatacggtggctaaactgctacatgg 90
