miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00006;Vault;CU855896.20/65265-65162 7955:Danio rerio
(zebrafish)
Length = 104
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 25 gcgttggtttagctcagtggttacttctgtgatccctgaaaaatcaacctttcatggtca 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgttggtttagctcagtggttacttctgtgatccctgaaaaatcaacctttcatggtca 60
Query: 85 cctcggtgcca 95
|||||||||||
Sbjct: 61 cctcggtgcca 71
>RF00006;Vault;CU855896.20/65648-65545 7955:Danio rerio
(zebrafish)
Length = 104
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 25 gcgttggtttagctcagtggttacttctgtga 56
||||||||||||||||||||||||||||||||
Sbjct: 1 gcgttggtttagctcagtggttacttctgtga 32
>RF00006;Vault;AANH01005876.1/65973-65874 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 gcgttggtttagctcagtggttacttctg 53
|||| ||||||||||||||||||||||||
Sbjct: 1 gcgtcggtttagctcagtggttacttctg 29
>RF00006;Vault;ABPL01037341.1/550-642 27751:Melanochromis auratus
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 tggtttagctcagtggttacttct 52
||||||||||||||||||||||||
Sbjct: 5 tggtttagctcagtggttacttct 28
>RF00006;Vault;ABPJ01004403.1/1140-1047 35575:Mchenga conophoros
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 gcgttggtttagctcagtggttacttct 52
||||| ||||||||||||||||||||||
Sbjct: 1 gcgttagtttagctcagtggttacttct 28
>RF00006;Vault;AANH01005876.1/66236-66335 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 25 gcgttggtttagctcagtggttacttct 52
|||| |||||||||||||||||||||||
Sbjct: 1 gcgtcggtttagctcagtggttacttct 28
>RF00006;Vault;CAAE01009081.1/10241-10331 99883:Tetraodon
nigroviridis
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ggtttagctcagtggttacttct 52
|||||||||||||||||||||||
Sbjct: 6 ggtttagctcagtggttacttct 28
>RF00006;Vault;CAAE01015120.1/740254-740351 99883:Tetraodon
nigroviridis
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tggtttagctcagtggttacttc 51
|||||||||||||||||||||||
Sbjct: 5 tggtttagctcagtggttacttc 27
>RF00006;Vault;AANH01005876.1/66956-66857 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ggtttagctcagtggttacttc 51
||||||||||||||||||||||
Sbjct: 6 ggtttagctcagtggttacttc 27
