miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gggttgtgccctcctgtgcctactgaactggtatcagtgtcatactggaaaactggctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttgtgccctcctgtgcctactgaactggtatcagtgtcatactggaaaactggctca 60
Query: 61 gttcagcaggaacaggagt 79
|||||||||||||||||||
Sbjct: 61 gttcagcaggaacaggagt 79
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 50 aaactggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||||
Sbjct: 42 aaactggctcagttcagcaggaacaggagt 71
>26413_tgu-mir-24:mirbase
Length = 132
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 99 actggctcagttcagcaggaacaggagt 126
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 33 actggctcagttcagcaggaacaggagt 6
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 33 actggctcagttcagcaggaacaggagt 6
>31442_oan-mir-24:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 50 actggctcagttcagcaggaacaggagt 77
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 59 actggctcagttcagcaggaacaggagt 86
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacaggagt 8
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacaggagt 8
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacaggagt 8
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 35 actggctcagttcagcaggaacaggagt 8
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 59 actggctcagttcagcaggaacaggagt 86
>33024_rno-mir-3074:mirbase
Length = 117
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacaggagt 21
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 50 actggctcagttcagcaggaacaggagt 77
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 47 actggctcagttcagcaggaacaggagt 74
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 78 actggctcagttcagcaggaacaggagt 105
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggagt 79
||||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggagt 69
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacaggag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacaggag 67
>25908_gga-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacaggag 67
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacaggag 78
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagga 77
||||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagga 77
||||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagga 73
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>28270_ggo-mir-24:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacagg 76
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>25444_pma-mir-24:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcaggaacag 75
||||||||||||||||||||||||
Sbjct: 56 actggctcagttcagcaggaacag 79
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggctcagttcagcaggaacagg 76
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggctcagttcagcaggaacagg 76
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggctcagttcagcaggaacagg 76
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 actggctcagttcagcagga 71
||||||||||||||||||||
Sbjct: 38 actggctcagttcagcagga 57
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 ctggctcagttcagcagga 71
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 ctggctcagttcagcagga 71
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
