miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34750_tni-mir-142a:mirbase
Length = 90
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 63 tcctactttatggatgagtgtactgt 88
>34311_dre-mir-142a:mirbase
Length = 91
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 64 tcctactttatggatgagtgtactgt 89
>34312_dre-mir-142a:mirbase
Length = 91
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 64 tcctactttatggatgagtgtactgt 89
>34604_fru-mir-142b:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 acagtgcagtcatccataaagtagaaagcactac 34
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>34751_tni-mir-142b:mirbase
Length = 86
Score = 109 bits (55), Expect = 3e-25
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaac-tctttgccacagtgtagtgt 59
||||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctttac-acagtgtagtgt 59
Query: 60 ttcctactttatggatgagtgtactgt 86
||||||||||||||||||||| |||||
Sbjct: 60 ttcctactttatggatgagtgcactgt 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1 acagtgcagtcatccataaagtagaaagcactac 34
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>34313_dre-mir-142b:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>25962_gga-mir-142:mirbase
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaact-ctttgccacagtgtagtgt 59
|||||||||||| |||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgc-agggtgtagtgt 60
Query: 60 ttcctactttatggatgagtgtactgt 86
|||||||||||||||||||||||||||
Sbjct: 61 ttcctactttatggatgagtgtactgt 87
>25963_gga-mir-142:mirbase
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaact-ctttgccacagtgtagtgt 59
|||||||||||| |||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgc-agggtgtagtgt 60
Query: 60 ttcctactttatggatgagtgtactgt 86
|||||||||||||||||||||||||||
Sbjct: 61 ttcctactttatggatgagtgtactgt 87
>31499_oan-mir-142:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 8e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
||||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct: 15 acagtgcagtcatccataaagtagaaagcactactaacagcgctg-tagggtgtagtgtt 73
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 74 tcctactttatggatgagtgtactgt 99
>27746_mml-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>27747_mml-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>28461_hsa-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>28462_hsa-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30234_ptr-mir-142:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30845_ppy-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30846_ppy-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>32747_rno-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>32748_rno-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>33228_bta-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
|||||||||||| |||||||||||||||||||||||| | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>33991_ssc-mir-142:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 gtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtttcc 63
||||||||| |||||||||||||||||||||||| | || | |||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtttcc 59
Query: 64 tactttatggatgagtgtact 84
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 gtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtttcc 63
||||||||| |||||||||||||||||||||||| | || | |||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtttcc 59
Query: 64 tactttatggatgagtgtact 84
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>25666_xla-mir-142:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tgtagtgtttcctactttatggatgagtgtactg 85
||||||||||||||||||||||||||||||||||
Sbjct: 51 tgtagtgtttcctactttatggatgagtgtactg 84
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tgtagtgtttcctactttatggatgagtgtactg 85
||||||||||||||||||||||||||||||||||
Sbjct: 51 tgtagtgtttcctactttatggatgagtgtactg 84
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tgtagtgtttcctactttatggatgagtgtactg 85
||||||||||||||||||||||||||||||||||
Sbjct: 51 tgtagtgtttcctactttatggatgagtgtactg 84
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tgtagtgtttcctactttatggatgagtgtactg 85
||||||||||||||||||||||||||||||||||
Sbjct: 51 tgtagtgtttcctactttatggatgagtgtactg 84
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tgtagtgtttcctactttatggatgagtgtactg 85
||||||||||||||||||||||||||||||||||
Sbjct: 51 tgtagtgtttcctactttatggatgagtgtactg 84
>26473_tgu-mir-142:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 2e-11
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 5 tgcagtcatccataaagtagaaagcactactaaac-tctttgccacagtgtagtgtttcc 63
|||||||| |||||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactg-cagggtgtagtgtttcc 59
Query: 64 tactttatggat 75
||||||||||||
Sbjct: 60 tactttatggat 71
>27390_mdo-mir-142:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 7e-11
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 gcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtttccta 65
||||||| |||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaacagcaatgt-agggtgtagtgtttccta 59
Query: 66 ctttatggatgagtg 80
|||||||||||||||
Sbjct: 60 ctttatggatgagtg 74
>26716_cfa-mir-142:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 38 gtgtagtgtttcctactttatggatg 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccataaagtagaaagcactactaa 37
||||||||||||||||||||||||
Sbjct: 2 ccataaagtagaaagcactactaa 25
>27041_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccataaagtagaaagcactactaa 37
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>27042_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccataaagtagaaagcactactaa 37
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>31874_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccataaagtagaaagcactactaa 37
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>31875_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ccataaagtagaaagcactactaa 37
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
