miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34756_tni-mir-153b:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 catctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtca 60
Query: 61 caaaaatgagcattggcaggtgtgac 86
||||||||||||||||||||||||||
Sbjct: 61 caaaaatgagcattggcaggtgtgac 86
>34326_dre-mir-153c:mirbase
Length = 151
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 4 ctcccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaa 63
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct: 35 ctcccagtgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaa 94
Query: 64 aaatgagcattggcaggtgtga 85
|||||| |||||| ||||||||
Sbjct: 95 aaatgatcattggtaggtgtga 116
>31508_oan-mir-153:mirbase
Length = 145
Score = 109 bits (55), Expect = 3e-25
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagct-agtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 52 ccagtgtcatttttgtgatctgcagcttagtactctggctccagttgcatagtcacaaaa 111
Query: 66 atgagcattggcaggtgtg 84
||| ||||||||||||||
Sbjct: 112 gtgatcattggcaggtgtg 130
>34325_dre-mir-153b:mirbase
Length = 148
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 10 gtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatga 69
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 41 gtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaaatga 100
Query: 70 gca 72
|||
Sbjct: 101 gca 103
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctggcttcagttgcatagtcacaaaag 70
Query: 67 tgagcattggcaggtgtg 84
||| ||||||||||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 67 tgagcattggcaggtgtg 84
||| ||||||||||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 67 tgagcattggcaggtgtg 84
||| ||||||||||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 67 tgagcattggcaggtgtg 84
||| ||||||||||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>30861_ppy-mir-153:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 67 tgagcattggcaggtgtg 84
||| ||||||||||||||
Sbjct: 71 tgatcattggcaggtgtg 88
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 95.6 bits (48), Expect = 5e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 12 gtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatgagc 71
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
Query: 72 attggcag 79
|||||||
Sbjct: 63 gttggcag 70
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 3e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatctgcagctagtattctcgctccagttgcatagtcacaaaag 60
Query: 67 tgagcattg 75
||| |||||
Sbjct: 61 tgatcattg 69
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 66
|||| |||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 11 ccagcgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
Query: 67 tgagcattggcaggtgtg 84
||| || |||||||||||
Sbjct: 71 tgatcactggcaggtgtg 88
>25972_gga-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>26729_cfa-mir-153:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>28311_ggo-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>30248_ptr-mir-153:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>32760_rno-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>34004_ssc-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 69 gtgatcattgg 79
>34608_fru-mir-153a:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 60
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 61 gtgatcattgg 71
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 11 tgtcatttttgtggtttgcagctagtactctggctc-cagttgcatagtcacaaaaatga 69
||||||||||||| ||||||||| ||| | | | || ||||||||||||||||||| |||
Sbjct: 13 tgtcatttttgtgatttgcagcttgtaattttggtctcagttgcatagtcacaaaagtga 72
Query: 70 gcattggcaggtg 82
||| ||||||||
Sbjct: 73 tcatgggcaggtg 85
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 gtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaaatg 68
|||||||||||||| | |||||||||||| | || |||||||||||||||||||| ||
Sbjct: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 71
Query: 69 agcattgg 76
| ||||||
Sbjct: 72 atcattgg 79
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 tgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaaatga 69
||||||||||||| | |||||||||||| | || |||||||||||||||||||| |||
Sbjct: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
Query: 70 gcattgg 76
||||||
Sbjct: 61 tcattgg 67
>27056_eca-mir-153:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 10 gtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaaatg 68
|||||||||||||| | |||||||||||| | || |||||||||||||||||||| ||
Sbjct: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
Query: 69 agcattg 75
| |||||
Sbjct: 61 atcattg 67
>34324_dre-mir-153a:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
Query: 66 atgagcattgg 76
||| ||||||
Sbjct: 66 gtgatcattgg 76
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
||||||||||||||||| |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
>31889_mmu-mir-153:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 10 gtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaaatg 68
|||||||||||||| |||||||||||| | || |||||||||||||||||||| ||
Sbjct: 3 gtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 62
Query: 69 agcattg 75
| |||||
Sbjct: 63 atcattg 69
>25501_pma-mir-153-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaaatgagcattgg 76
|||||||||||||||||| ||| ||||||
Sbjct: 45 agttgcatagtcacaaaagtgatcattgg 73
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 tgtcatttttgtggtttgcagct 33
||||||||||||| |||||||||
Sbjct: 8 tgtcatttttgtgatttgcagct 30
>34755_tni-mir-153a:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaaatgagcattgg 76
|||||||||||||||||| ||| ||||||
Sbjct: 44 agttgcatagtcacaaaagtgatcattgg 72
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 46 ccagttgcatagtcacaaaa 65
||||||||||||||||||||
Sbjct: 45 ccagttgcatagtcacaaaa 64
