miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 agctggagcgtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctggagcgtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaaca 60
Query: 61 agaaactgccttgattacgtcagtt 85
|||||||||||||||||||||||||
Sbjct: 61 agaaactgccttgattacgtcagtt 85
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 135 bits (68), Expect = 6e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 2 gctggagcgtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaacaa 61
||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 7 gctggtgcgtggtttaggtagtttcatgttgttgggattggcttcctggctcgacaacaa 66
Query: 62 gaaactgccttgattacgtcagtt 85
||||||||||||||||||||||||
Sbjct: 67 gaaactgccttgattacgtcagtt 90
>34350_dre-mir-196c:mirbase
Length = 110
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 8 gcgtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaacaagaaact 67
|||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||
Sbjct: 15 gcgtggtttaggtagtttgatgttgttggggttgacttcctggctcgacaacaagaaact 74
Query: 68 gccttgattacgtcagtt 85
||||||||||||||||||
Sbjct: 75 gccttgattacgtcagtt 92
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 95.6 bits (48), Expect = 5e-21
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaacaagaaactgc 69
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 18 gtggtttaggtagtttcatgttgttgggattggcttt-tagctcggcaacaagaaactgc 76
Query: 70 cttgattacgtcagtt 85
||| ||||||||||||
Sbjct: 77 cttaattacgtcagtt 92
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 65.9 bits (33), Expect = 4e-12
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggggatggctt---cctggctcggcaacaagaaac 66
|||||||||||||||||||||||||||| || |||| | | | ||||||||||||||
Sbjct: 19 gtggtttaggtagtttcatgttgttggg-attgctttttcttaacgcggcaacaagaaac 77
Query: 67 tgccttgattacgtcagtt 85
|||||| ||||||||||||
Sbjct: 78 tgccttaattacgtcagtt 96
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttgggg 33
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttgggg 33
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>25515_pma-mir-196a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 cgtggtttaggtagtttcatgttgttgggg 38
|||||| |||||||||||||||||||||||
Sbjct: 4 cgtggtctaggtagtttcatgttgttgggg 33
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||||||||||||||| |||||||||||
Sbjct: 10 gtggtttaggtagttttatgttgttggg 37
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 caacaagaaactgccttgattacgtcagt 84
||||||||||||||||| ||||| |||||
Sbjct: 56 caacaagaaactgccttaattacatcagt 84
>27515_age-mir-196:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 23 gtggcttaggtagtttcatgttgttggg 50
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 10 gtggcttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 10 gtggcttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 16 gtggcttaggtagtttcatgttgttggg 43
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 14 ttaggtagtttcatgttgttggg 36
>27080_eca-mir-196a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 5 ttaggtagtttcatgttgttggg 27
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taggtagtttcatgttgttggg 37
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 ctcggcaacaagaaactgcct 71
|||||||||||||||||||||
Sbjct: 36 ctcggcaacaagaaactgcct 56
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taggtagtttcatgttgttggg 37
||||||||||||||||||||||
Sbjct: 24 taggtagtttcatgttgttggg 45
>25516_pma-mir-196b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 cgtggtttaggtagtttcatgttgttggg 37
|||||| |||||||| |||||||||||||
Sbjct: 4 cgtggtgtaggtagtatcatgttgttggg 32
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttgggg 38
||||||||||||| |||||||||||
Sbjct: 14 tttaggtagtttcctgttgttgggg 38
>31526_oan-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttgggg 38
||||||||||||| |||||||||||
Sbjct: 14 tttaggtagtttcctgttgttgggg 38
>27081_eca-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 13 tttaggtagtttcctgttgttggg 36
>27792_mml-mir-196b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 13 tttaggtagtttcctgttgttggg 36
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 13 tttaggtagtttcctgttgttggg 36
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 13 tttaggtagtttcctgttgttggg 36
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 13 tttaggtagtttcctgttgttggg 36
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 14 tttaggtagtttcctgttgttggg 37
>32784_rno-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 14 tttaggtagtttcctgttgttggg 37
>33270_bta-mir-196b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 14 tttaggtagtttcctgttgttggg 37
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 12 tttaggtagtttcctgttgttggg 35
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||| ||||||||||
Sbjct: 12 tttaggtagtttcctgttgttggg 35
>34349_dre-mir-196b:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
|||||||||||||| |||||||||
Sbjct: 9 tttaggtagtttcaagttgttggg 32
>34351_dre-mir-196d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
|||||||||||| |||||||||||
Sbjct: 6 tttaggtagttttatgttgttggg 29
