miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 agctggagcgtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaaca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4 agctggagcgtggtttaggtagtttcatgttgttggggttggcttcctggctcggcaaca 63
Query: 61 agaaactgccttgattacgtcagtt 85
|||||||||||||||||||||||||
Sbjct: 64 agaaactgccttgattacgtcagtt 88
>RF00256;mir-196;CAAK05032291.1/38519-38429 7955:Danio rerio
(zebrafish)
Length = 91
Score = 115 bits (58), Expect = 9e-26
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 8 gcgtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaacaagaaact 67
|||||||||| ||||||| |||||||||||| || |||||||||||| ||||||||||||
Sbjct: 11 gcgtggtttaagtagtttgatgttgttggggttgacttcctggctcgacaacaagaaact 70
Query: 68 gccttgattacgtcagtt 85
||||||||||||||||||
Sbjct: 71 gccttgattacgtcagtt 88
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 95.6 bits (48), Expect = 9e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggggatggcttcctggctcggcaacaagaaactgc 69
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggattggcttt-tagctcggcaacaagaaactgc 71
Query: 70 cttgattacgtcagtt 85
||| ||||||||||||
Sbjct: 72 cttaattacgtcagtt 87
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 cgtggtttaggtagtttcatgttgttgggg 38
|||||| |||||||||||||||||||||||
Sbjct: 12 cgtggtctaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AC149041.19/33709-33798 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 gcgtggtttaggtagtttcatgttgttggg 37
|||||||||||||||| |||||||||||||
Sbjct: 11 gcgtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||
Sbjct: 16 tttaggtagtttcatgttgttgggg 40
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||| |||||||||||||||||||||||
Sbjct: 13 gtggcttaggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497006.1/141864-141954 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||||||||||||||| |||||||||||
Sbjct: 13 gtggtttaggtagttttatgttgttggg 40
>RF00256;mir-196;DQ481664.1/123101-123190 31033:Takifugu rubripes
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||||||||||||| |||||||||||||
Sbjct: 13 gtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AAGU02055285.1/1599-1508 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
