miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tcgagtggtttaggtagtttcatgttgttggggtccatttcaaactctgcaacatgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgagtggtttaggtagtttcatgttgttggggtccatttcaaactctgcaacatgaaac 60
Query: 61 tgtcttaattgcccca 76
||||||||||||||||
Sbjct: 61 tgtcttaattgcccca 76
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 tcgagtggtttaggtagtttcatgttgttggggtccatttcaaactctgcaacatgaaac 60
|||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 1 tcgagtggtttaggtagtttcatgttgttgggattacattcaaactctgcaacgtgaaac 60
Query: 61 tgtcttaattgcccca 76
||||||||||||||||
Sbjct: 61 tgtcttaattgcccca 76
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
||||||||||||||||||||||||||||
Sbjct: 19 gtggtttaggtagtttcatgttgttggg 46
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
||||||||||||||||||||||||||||
Sbjct: 18 gtggtttaggtagtttcatgttgttggg 45
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
||||||||||||||||||||||||||||
Sbjct: 15 gtggtttaggtagtttcatgttgttggg 42
>34351_dre-mir-196d:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 1e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 4 agtggtttaggtagtttcatgttgttggggtccatttca-aactctgcaacatgaaactg 62
|||| |||||||||||| ||||||||||| || |||| | | | | |||||| |||||||
Sbjct: 1 agtgatttaggtagttttatgttgttgggctctattttatatccccgcaacacgaaactg 60
Query: 63 tcttaattgcc 73
|||||||||||
Sbjct: 61 tcttaattgcc 71
>25515_pma-mir-196a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggggt 34
||||| ||||||||||||||||||||||||
Sbjct: 5 gtggtctaggtagtttcatgttgttggggt 34
>34350_dre-mir-196c:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggggt 34
|||||||||||||||| |||||||||||||
Sbjct: 17 gtggtttaggtagtttgatgttgttggggt 46
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||||||||||||||| |||||||||||
Sbjct: 10 gtggtttaggtagttttatgttgttggg 37
>27515_age-mir-196:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 23 gtggcttaggtagtttcatgttgttggg 50
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 10 gtggcttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 19 gtggcttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 10 gtggcttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 16 gtggcttaggtagtttcatgttgttggg 43
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 14 ttaggtagtttcatgttgttggg 36
>27080_eca-mir-196a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 5 ttaggtagtttcatgttgttggg 27
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 24 taggtagtttcatgttgttggg 45
>27081_eca-mir-196b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 13 tttaggtagtttcctgttgttgggatcca 41
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttgggg 33
||||||||||||| |||||||||||
Sbjct: 14 tttaggtagtttcctgttgttgggg 38
>27792_mml-mir-196b:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 13 tttaggtagtttcctgttgttgggatcca 41
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 13 tttaggtagtttcctgttgttgggatcca 41
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 13 tttaggtagtttcctgttgttgggatcca 41
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 13 tttaggtagtttcctgttgttgggatcca 41
>31526_oan-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttgggg 33
||||||||||||| |||||||||||
Sbjct: 14 tttaggtagtttcctgttgttgggg 38
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 14 tttaggtagtttcctgttgttgggatcca 42
>32784_rno-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 14 tttaggtagtttcctgttgttgggatcca 42
>33270_bta-mir-196b:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 14 tttaggtagtttcctgttgttgggatcca 42
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 12 tttaggtagtttcctgttgttgggatcca 40
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 12 tttaggtagtttcctgttgttgggatcca 40
>25516_pma-mir-196b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 5 gtggtgtaggtagtatcatgttgttggg 32
>34349_dre-mir-196b:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggg 32
|||||||||||||| |||||||||
Sbjct: 9 tttaggtagtttcaagttgttggg 32
>26754_cfa-mir-196b:mirbase
Length = 58
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggggtcca 37
||||||||||| |||||||||| ||||
Sbjct: 1 taggtagtttcctgttgttgggatcca 27
