miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 tcgagtggtttaggtagtttcatgttgttggggtccatttcaaactctgcaacatgaaac 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 9 tcgagtggtttaggtagtttcatgttgttggggtccatttctaactctgcaacacgaaac 68
Query: 61 tgtcttaattgc 72
||||||||||||
Sbjct: 69 tgtcttaattgc 80
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 103 bits (52), Expect = 3e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 tcgagtggtttaggtagtttcatgttgttggggtccatttcaaactctgcaacatgaaac 60
|||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 9 tcgagtggtttaggtagtttcatgttgttgggattacattcaaactctgcaacgtgaaac 68
Query: 61 tgtcttaattgcccca 76
||||||||||||||||
Sbjct: 69 tgtcttaattgcccca 84
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 3 gagtggtttaggtagtttcatgttgttggggtcca-tttcaaactctgcaacatgaaact 61
|||||||||||||||||||||||||||||| |||| |||| | |||| ||||| ||||||
Sbjct: 11 gagtggtttaggtagtttcatgttgttgggatccattttctacctctacaacacgaaact 70
Query: 62 gtcttaattgcccca 76
|||| ||||| ||||
Sbjct: 71 gtctgaattggccca 85
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggggt 34
||||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggggt 42
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggggtccatttcaaactctgcaacatgaaactgtc 64
|||||||||||||||||||||||||||| || || |||||| ||||| ||||||| |
Sbjct: 13 gtggtttaggtagtttcatgttgttgggatcgggtttaaactcgacaacaagaaactgcc 72
Query: 65 ttaatt 70
||||||
Sbjct: 73 ttaatt 78
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggggt 34
||||| ||||||||||||||||||||||||
Sbjct: 13 gtggtctaggtagtttcatgttgttggggt 42
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttgggg-tcca-tttcaaactctgcaacatgaaactgtctt 66
||||||||||||||||||||||||| |||| |||||| | || ||||| |||| || |||
Sbjct: 16 tttaggtagtttcatgttgttggggctccattttcaatccctacaacacgaaagtgcctt 75
Query: 67 aattgc 72
||||||
Sbjct: 76 aattgc 81
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttgggg 33
|||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||| |||||||||||||||||||||||
Sbjct: 13 gtggcttaggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497006.1/141864-141954 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggg 32
||||||||||||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||||||||||||||| |||||||||||
Sbjct: 13 gtggtttaggtagttttatgttgttggg 40
>RF00256;mir-196;DQ481664.1/123101-123190 31033:Takifugu rubripes
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||||||||||||| |||||||||||||
Sbjct: 13 gtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AC149041.19/33709-33798 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggg 32
|||||||||||||| |||||||||||||
Sbjct: 13 gtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AAGU02055285.1/1599-1508 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttaggtagtttcatgttgttggg 32
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC107364.1/76752-76844 7955:Danio rerio
(zebrafish)
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 aggtagtttcatgttgttggggtccatttcaaa-ctctgcaacatgaaactgtcttaatt 70
||||||||| ||||||||||| || |||| | | | | |||||| |||||||||||||||
Sbjct: 20 aggtagttttatgttgttgggctctattttatatccccgcaacacgaaactgtcttaatt 79
Query: 71 gcc 73
|||
Sbjct: 80 gcc 82
>RF00256;mir-196;CAAK05032291.1/38519-38429 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 gtggtttaggtagtttcatgttgttggggt 34
|||||||| ||||||| |||||||||||||
Sbjct: 13 gtggtttaagtagtttgatgttgttggggt 42
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 agtggtttaggtagtttcatgttgttggg 32
||||| |||||||||||| ||||||||||
Sbjct: 12 agtgggttaggtagtttcctgttgttggg 40
>RF00256;mir-196;ABRQ01101197.1/2188-2097 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tttaggtagtttcatgttgttggggtcca 37
||||||||||||| |||||||||| ||||
Sbjct: 17 tttaggtagtttcctgttgttgggatcca 45
