miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34771_tni-mir-196b:mirbase
Length = 69
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 60
|||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 tgtgatgtaggtagtttcaagttgttgggctaaactttggtgatcacaggaacctgaaac 60
Query: 61 tgcc 64
||||
Sbjct: 61 tgcc 64
>34349_dre-mir-196b:mirbase
Length = 79
Score = 69.9 bits (35), Expect = 2e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 60
|||||| ||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 4 tgtgatttaggtagtttcaagttgttgggctggacgtttaatttcacaggaacctgaaac 63
Query: 61 tgcctga 67
|||||||
Sbjct: 64 tgcctga 70
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggct 31
|||||||||||| |||||||||||
Sbjct: 24 taggtagtttcatgttgttgggct 47
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 15 taggtagtttcatgttgttgggc 37
>27080_eca-mir-196a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 7 taggtagtttcatgttgttgggc 29
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 7 taggtagtttcatgttgttgggc 29
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 7 taggtagtttcatgttgttgggc 29
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 7 taggtagtttcatgttgttgggc 29
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 6 taggtagtttcatgttgttgggc 28
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 7 taggtagtttcatgttgttgggc 29
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 24 taggtagtttcatgttgttgggc 46
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 taggtagtttcaagttgttgggc 30
|||||||||||| ||||||||||
Sbjct: 24 taggtagtttcatgttgttgggc 46
