miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;CAAB01002064.1/23565-23652 31033:Takifugu
rubripes
Length = 88
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 69
Query: 61 tgcctgagt 69
|||||||||
Sbjct: 70 tgcctgagt 78
>RF00256;mir-196;BX927395.18/57996-57904 7955:Danio rerio
(zebrafish)
Length = 93
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 60
|||||| ||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 12 tgtgatttaggtagtttcaagttgttgggctggacgtttaatttcacaggaacctgaaac 71
Query: 61 tgcctga 67
|||||||
Sbjct: 72 tgcctga 78
>RF00256;mir-196;EU025707.1/41141-41230 8030:Salmo salar (Atlantic
salmon)
Length = 90
Score = 65.9 bits (33), Expect = 6e-11
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 60
|||||| ||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 12 tgtgatttaggtagtttcaagttgttgggctggacgcgt---atcacaggaacctgaaac 68
Query: 61 tgcctga 67
| |||||
Sbjct: 69 tacctga 75
>RF00256;mir-196;AC182753.1/69808-69903 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 96
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttgggctgaactcttgtgatcacaggaacctgaaac 60
|||||| ||||||||||||||||||| ||||| | ||| |||||||||||||||||||
Sbjct: 15 tgtgatttaggtagtttcaagttgtttggctggatgcttaagatcacaggaacctgaaac 74
Query: 61 tgcct 65
||||
Sbjct: 75 ggcct 79
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttggg 29
|||||| |||||||||||| |||||||||
Sbjct: 12 tgtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttggg 29
|||||| |||||||||||| |||||||||
Sbjct: 11 tgtgatttaggtagtttcatgttgttggg 39
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgtgatataggtagtttcaagttgttggg 29
|||||| |||||||||||| |||||||||
Sbjct: 12 tgtgatttaggtagtttcatgttgttggg 40
