miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 66
Query: 61 tctgcacattggttagacagtgcatgg 87
|||||||||||||||||||||||||||
Sbjct: 67 tctgcacattggttagacagtgcatgg 93
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 149 bits (75), Expect = 7e-36
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 1 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7 tcctgctccgtcatcccagtgttcagactacctgttcaggatcatactggtgtacagtag 66
Query: 61 tctgcacattggttagacagtgcatgg 87
|||||||||||||||||| ||||||||
Sbjct: 67 tctgcacattggttagactgtgcatgg 93
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 141 bits (71), Expect = 2e-33
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 60
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 7 tcctgctccgtcatcccagtgttcagactacctgttcagaatcttcctggtgtacagtag 66
Query: 61 tctgcacattggttagacagtgcatgg 87
|||||||||||||||||| ||||||||
Sbjct: 67 tctgcacattggttagactgtgcatgg 93
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 101 bits (51), Expect = 1e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 5 gctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtagtctg 64
|||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 11 gctccgtccacccagtgttcagactacctgttcattatcatactggtgtacagtagtctg 70
Query: 65 cacattggttagacagtgcatgg 87
|||||||||||||| | ||||||
Sbjct: 71 cacattggttagactgggcatgg 93
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 99.6 bits (50), Expect = 6e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 60
|||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 7 tcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtag 66
Query: 61 tctgcacattggttagac 78
||||||||||||||||||
Sbjct: 67 tctgcacattggttagac 84
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 2 cctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtagt 61
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 8 cctgctccgtccacccagtgttcagactacctgttcattgtcatactggtgtacagtagt 67
Query: 62 ctgcacattggttagac 78
|||||||||||||||||
Sbjct: 68 ctgcacattggttagac 84
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 60
|||||||||||| ||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 7 tcctgctccgtcggcccagtgttcagactacctgttcaggacaatattgttgtacagtag 66
Query: 61 tctgcacattggttaga 77
|||||||||||||||||
Sbjct: 67 tctgcacattggttaga 83
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 5 gctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtagtctg 64
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 11 gctccgtccacccagtgttcagactacctgttcattgtcatactggtgtacagtagtctg 70
Query: 65 cacattggttagac 78
||||||||||||||
Sbjct: 71 cacattggttagac 84
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 14 tcccagtgttcagactacctgttcaggattttact--ggtgtacagtagtctgcacattg 71
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 20 tcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcacattg 79
Query: 72 gttagac 78
|||||||
Sbjct: 80 gttagac 86
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 69.9 bits (35), Expect = 5e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactg-gtgtacagtagtctgcacattggt 73
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga-attagtgtttgtacagtagtctgcacattggt 78
Query: 74 tag 76
|||
Sbjct: 79 tag 81
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 69.9 bits (35), Expect = 5e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactgg-tgtacagtagtctgcacattggt 73
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga-agtagtggttgtacagtagtctgcacattggt 79
Query: 74 tag 76
|||
Sbjct: 80 tag 82
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 69.9 bits (35), Expect = 5e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactgg-tgtacagtagtctgcacattggt 73
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga-agtagtggttgtacagtagtctgcacattggt 78
Query: 74 tag 76
|||
Sbjct: 79 tag 81
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 69.9 bits (35), Expect = 5e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactgg-tgtacagtagtctgcacattggt 73
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga-agtagtggttgtacagtagtctgcacattggt 79
Query: 74 tag 76
|||
Sbjct: 80 tag 82
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 65.9 bits (33), Expect = 8e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttact--ggtgtacagtagtctgcacattgg 72
||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgtccaggagattgcaaaggtgtacagtagtctgcacattgg 80
Query: 73 ttag 76
||||
Sbjct: 81 ttag 84
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 63.9 bits (32), Expect = 3e-10
Identities = 58/65 (89%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactg---gtgtacagtagtctgcacattg 71
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggggtt--ctgaatgtgtacagtagtctgcacattg 78
Query: 72 gttag 76
|||||
Sbjct: 79 gttag 83
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 6 ctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtagtctgc 65
||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 11 ctccgtctgcccagtgttcagactacctgttcaggactacgagattgtacagtagtctgc 70
Query: 66 acattggttag 76
|||||||||||
Sbjct: 71 acattggttag 81
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 catcccagtgttcagactacctgttcagga 41
||||||||||||||||||||||||||||||
Sbjct: 18 catcccagtgttcagactacctgttcagga 47
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcagga--ttttactggtgtacagtagtctgcacattgg 72
||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattgg 80
Query: 73 ttag 76
||||
Sbjct: 81 ttag 84
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 catcccagtgttcagactacctgttcagg 40
|||||||||||||||||||||||||||||
Sbjct: 18 catcccagtgttcagactacctgttcagg 46
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggat--tttactggtgtacagtagtctgcacattgg 72
|||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggcgcctctgcatgtgtacagtagtctgcacattgg 80
Query: 73 ttag 76
||||
Sbjct: 81 ttag 84
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 gtgtacagtagtctgcacattggttag 76
|||||||||||||||||||||||||||
Sbjct: 58 gtgtacagtagtctgcacattggttag 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcagg 40
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 gtgtacagtagtctgcacattggttag 76
|||||||||||||||||||||||||||
Sbjct: 57 gtgtacagtagtctgcacattggttag 83
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tcccagtgttcagactacctgttcagg 40
|||||||||||||||||||||||||||
Sbjct: 20 tcccagtgttcagactacctgttcagg 46
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcagg 40
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 gtacagtagtctgcacattggttag 76
|||||||||||||||||||||||||
Sbjct: 60 gtacagtagtctgcacattggttag 84
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgtacagtagtctgcacattggttag 76
||||||||||||||||||||||||||
Sbjct: 56 tgtacagtagtctgcacattggttag 81
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgtacagtagtctgcacattggttag 76
||||||||||||||||||||||||||
Sbjct: 56 tgtacagtagtctgcacattggttag 81
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 74
|||||||||||||||||||||||| || | | | || ||||||||| |||||||||||
Sbjct: 20 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 79
Query: 75 ag 76
||
Sbjct: 80 ag 81
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 74
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacattggtt 80
Query: 75 ag 76
||
Sbjct: 81 ag 82
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 74
|||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 80
Query: 75 ag 76
||
Sbjct: 81 ag 82
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 74
|||||||||||||||||||||||| | || | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 80
Query: 75 a 75
|
Sbjct: 81 a 81
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttcagga 41
|||||||||||||||||||||| ||||
Sbjct: 20 cccagtgttcagactacctgttaagga 46
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 cccagtgttcagactacctgttc 37
|||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttc 43
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 acagtagtctgcacattggttag 76
|||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttag 82
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 tgtacagtagtctgcacattggttag 76
|||||||||||| |||||||||||||
Sbjct: 54 tgtacagtagtcagcacattggttag 79
