miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 73
Query: 61 attggttaggctg 73
|||||||||||||
Sbjct: 74 attggttaggctg 86
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 72
Query: 61 attggttaggctg 73
|||||||||||||
Sbjct: 73 attggttaggctg 85
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 73
Query: 61 attggttaggctg 73
|||||||||||||
Sbjct: 74 attggttaggctg 86
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 129 bits (65), Expect = 5e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcac 60
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 13 ccgcctgcccagtgttcagactacctgttcaggaattagtgtttgtacagtagtctgcac 72
Query: 61 attggttaggctg 73
|||||||||||||
Sbjct: 73 attggttaggctg 85
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 99.6 bits (50), Expect = 5e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 67
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggcgtagagattgtacagtagtctgcacattggtt 80
Query: 68 aggctg 73
||||||
Sbjct: 81 aggctg 86
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 5 ctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattg 64
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttcaggactacgagattgtacagtagtctgcacattg 76
Query: 65 gttaggctg 73
|||||||||
Sbjct: 77 gttaggctg 85
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 79.8 bits (40), Expect = 4e-15
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 7 gcccagtgttcagactacctgttcagga-agtagtggttgtacagtagtctgcacattgg 65
|||||||||||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggacaata-ttgttgtacagtagtctgcacattgg 78
Query: 66 ttag 69
||||
Sbjct: 79 ttag 82
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 67
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 80
Query: 68 ag 69
||
Sbjct: 81 ag 82
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcaggaagtagtggt-tgtacagtagtctgcacattggt 66
||||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggacatgtacagtagtctgcacattggt 80
Query: 67 taggctg 73
|||||||
Sbjct: 81 taggctg 87
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcaggaagtagtggt-tgtacagtagtctgcacattggt 66
|||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||
Sbjct: 21 cccagtgttcagactacctgttcaggcggctgtgatgtgtacagtagtctgcacactggt 80
Query: 67 taggctg 73
|||||||
Sbjct: 81 taggctg 87
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 69.9 bits (35), Expect = 4e-12
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcaggaag-ta-gtggttgtacagtagtctgc 58
|||||| ||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 14 ccgccttcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgc 73
Query: 59 acattggttag 69
|||||||||||
Sbjct: 74 acattggttag 84
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 69.9 bits (35), Expect = 4e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcagga-agtagtggttgtacagtagtctgcacattggt 66
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactgg-tgtacagtagtctgcacattggt 79
Query: 67 tag 69
|||
Sbjct: 80 tag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 69.9 bits (35), Expect = 4e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcagga-agtagtggttgtacagtagtctgcacattggt 66
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactgg-tgtacagtagtctgcacattggt 79
Query: 67 tag 69
|||
Sbjct: 80 tag 82
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 2 cgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcaca 61
|||||||||||||||||||||||||||||| | | | | || |||||||||||||||
Sbjct: 15 cgcctgcccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcaca 74
Query: 62 ttggttaggct 72
|||||||||||
Sbjct: 75 ttggttaggct 85
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 63.9 bits (32), Expect = 2e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 2 cgcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcaca 61
|||||||||||||||||||||||||||||| | | | | || ||||||||| |||||
Sbjct: 14 cgcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcaca 73
Query: 62 ttggttaggctg 73
||||||||||||
Sbjct: 74 ttggttaggctg 85
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 43 ttgtacagtagtctgcacattggttaggctg 73
|||||||||||||||||||||||||||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggctg 85
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 43 ttgtacagtagtctgcacattggttaggctg 73
|||||||||||||||||||||||||||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggctg 85
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggctg 73
||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctg 88
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggctg 73
||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctg 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcagg 33
||||| |||||||||||||||||||||||||||
Sbjct: 14 ccgcccgcccagtgttcagactacctgttcagg 46
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggctg 73
||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctg 88
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggctg 73
||||||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggctg 87
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggctg 73
||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctg 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcagg 33
||||| |||||||||||||||||||||||||||
Sbjct: 14 ccgccggcccagtgttcagactacctgttcagg 46
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttc 30
||||||||||||||||||||||||||||||
Sbjct: 14 ccgcctgcccagtgttcagactacctgttc 43
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 acagtagtctgcacattggttaggct 72
||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggct 85
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 67
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagaatcttcctggtgtacagtagtctgcacattggtt 80
Query: 68 ag 69
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ccgcctgcccagtgttcagactacctgttcagg 33
||||| |||||||||||||||||||||||||||
Sbjct: 14 ccgccggcccagtgttcagactacctgttcagg 46
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gtacagtagtctgcacattggttaggctg 73
|||||||||||||||||||||||||||||
Sbjct: 60 gtacagtagtctgcacattggttaggctg 88
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 gcctgcccagtgttcagactacctgttca 31
|||||||||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttca 44
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 gcctgcccagtgttcagactacctgttca 31
|||||||||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttca 44
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 acagtagtctgcacattggttaggctg 73
|||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctg 86
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggc 71
||||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggc 85
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 54.0 bits (27), Expect = 2e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 7 gcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggt 66
||||||||||||||||||||||| |||| || |||| |||| ||||||||||| |||
Sbjct: 19 gcccagtgttcagactacctgttaaggacaatgtcgttgcacagcagtctgcacatcggt 78
Query: 67 tag 69
|||
Sbjct: 79 tag 81
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcag-gaagtagtggttgtacagtagtctgcacattggt 66
|||||||||||||||||||||||| | || |||| ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggt-gtacagtagtctgcacattggt 79
Query: 67 tag 69
|||
Sbjct: 80 tag 82
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcaggaag-tagtggttgtacagtagtctgcacattggt 66
|||||||||||||||||||||||| | || |||| ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggt-gtacagtagtctgcacattggt 79
Query: 67 tag 69
|||
Sbjct: 80 tag 82
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 8 cccagtgttcagactacctgttcag-gaagtagtggttgtacagtagtctgcacattggt 66
|||||||||||||||||||||||| | || |||| ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggt-gtacagtagtctgcacattggt 79
Query: 67 tag 69
|||
Sbjct: 80 tag 82
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttaggctg 73
|||||||||||| |||||||||||||||||
Sbjct: 54 tgtacagtagtcagcacattggttaggctg 83
