miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 ctccccgtcctgcctgcccagtgttcagactacctgttcatcagactaaagctgaacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ctccccgtcctgcctgcccagtgttcagactacctgttcatcagactaaagctgaacagt 64
Query: 61 agtctgcacattggttaagctgggttgggacacac 95
|||||||||||||||||||||||||||||||||||
Sbjct: 65 agtctgcacattggttaagctgggttgggacacac 99
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 129 bits (65), Expect = 7e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 9 cctgcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgca 68
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 13 cctgcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgca 72
Query: 69 cattggttaagctgggttgggacac 93
||||||||| |||||| ||||||||
Sbjct: 73 cattggttaggctgggctgggacac 97
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 12 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 71
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 74
Query: 72 tggttaagctgggttgggacacaca 96
|||||| |||||| |||||||||||
Sbjct: 75 tggttaggctgggctgggacacaca 99
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 109 bits (55), Expect = 7e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 12 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 71
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacat 75
Query: 72 tggttaagctgggttggga 90
|||||| ||| || |||||
Sbjct: 76 tggttaggctaggctggga 94
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 83.8 bits (42), Expect = 4e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 12 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 71
|||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcctccagctacaactgaacagtagtctgcacat 75
Query: 72 tggtta 77
||||||
Sbjct: 76 tggtta 81
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 cccgtcctgcctgcccagtgttcagactacctgttca 40
||||||| |||||||||||||||||||||||||||||
Sbjct: 7 cccgtcccgcctgcccagtgttcagactacctgttca 43
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 16 gcccagtgttcagactacctgttcatcagact--aaagctgaacagtagtctgcacattg 73
|||||||||||||||||||||| || ||| | |||| || ||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgtccaggagattgcaaaggtgtacagtagtctgcacattg 79
Query: 74 gttaagctggg 84
|||| ||||||
Sbjct: 80 gttaggctggg 90
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 3 ccccgtcctgcctgcccagtgttcagactacctgttca 40
|||| ||| |||||||||||||||||||||||||||||
Sbjct: 7 ccccatcccgcctgcccagtgttcagactacctgttca 44
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 16 gcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggt 75
||||||||||||||||||||||||| | | || | || ||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggacaatattgttgtacagtagtctgcacattggt 79
Query: 76 ta 77
||
Sbjct: 80 ta 81
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 12 gcctgcccagtgttcagactacctgttcatcagact--aaagctgaacagtagtctgcac 69
|||| |||||||||||||||||||||||| | || |||| || ||||||||||||||
Sbjct: 16 gccttcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcac 75
Query: 70 attggtta 77
||||||||
Sbjct: 76 attggtta 83
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 gcctgcccagtgttcagactacctgttca 40
|||||||||||||||||||||||||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttca 44
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 gcctgcccagtgttcagactacctgttca 40
|||||||||||||||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttca 43
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 76
||||||||||||||||||||||||| | || | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggtgtacagtagtctgcacattggtt 80
Query: 77 a 77
|
Sbjct: 81 a 81
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcatcagacta--aagctgaacagtagtctgcacattgg 74
|||||||||||||||||||||||| || || || || |||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattgg 80
Query: 75 ttaagctggg 84
||| ||||||
Sbjct: 81 ttaggctggg 90
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 ctgcccagtgttcagactacctgttca 40
|||||||||||||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca 43
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctgggttggg 89
|||||||||||||||||||||| |||||| ||||
Sbjct: 59 acagtagtctgcacattggttaggctgggctggg 92
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctgggttggg 89
|||||||||||||||||||||| |||||| ||||
Sbjct: 59 acagtagtctgcacattggttaggctgggctggg 92
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gcccagtgttcagactacctgttca 40
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctggg 84
|||||||||||||||||||||| ||||||
Sbjct: 62 acagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gcccagtgttcagactacctgttca 40
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctggg 84
|||||||||||||||||||||| ||||||
Sbjct: 62 acagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctggg 84
|||||||||||||||||||||| ||||||
Sbjct: 61 acagtagtctgcacattggttaggctggg 89
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctggg 84
|||||||||||||||||||||| ||||||
Sbjct: 61 acagtagtctgcacattggttaggctggg 89
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gcccagtgttcagactacctgttca 40
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctggg 84
|||||||||||||||||||||| ||||||
Sbjct: 62 acagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 76
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 80
Query: 77 a 77
|
Sbjct: 81 a 81
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 76
|||||||||||||||||||||||| | || | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactggtgtacagtagtctgcacattggtt 80
Query: 77 a 77
|
Sbjct: 81 a 81
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcat 41
|||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcat 45
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 76
|||||||||||||||||||||||| | || | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 80
Query: 77 a 77
|
Sbjct: 81 a 81
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttcat 41
|||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcat 45
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttca 40
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctgggt 85
||||||||||||||| |||||| |||||||
Sbjct: 61 acagtagtctgcacactggttaggctgggt 90
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttca 40
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggtta 77
||||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggtta 82
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttca 40
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggttaagctg 82
|||||||||||||||||||||| ||||
Sbjct: 60 acagtagtctgcacattggttaggctg 86
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 cccagtgttcagactacctgttca 40
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 acagtagtctgcacattggtta 77
||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggtta 81
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gcccagtgttcagactacctgtt 38
|||||||||||||||||||||||
Sbjct: 19 gcccagtgttcagactacctgtt 41
