miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34775_tni-mir-200a:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgatg 70
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 catcttacctgacagtgctggattatactactgttgttctaacactgtctggtaacgatg 60
Query: 71 tt 72
||
Sbjct: 61 tt 62
>34355_dre-mir-200a:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 10 ccatcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgat 69
|||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct: 13 ccatcttaccggacagtgctggactgtataactgtt-ttctaacactgtctggtaacgat 71
Query: 70 gttttctgggtgac 83
|||| ||||||||
Sbjct: 72 gtttgttgggtgac 85
>34310_dre-mir-141:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgatg 70
||||||||| ||||||||| | ||| | |||| ||||||||||||||||||||||||||
Sbjct: 13 catcttacctgacagtgcttggctgttc-actgatgttctaacactgtctggtaacgatg 71
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatgttt 73
|||||||||||||||||||||||||||
Sbjct: 50 ttctaacactgtctggtaacgatgttt 76
>25991_gga-mir-200a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatgttt 73
|||||||||||||||||||||||||||
Sbjct: 49 ttctaacactgtctggtaacgatgttt 75
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgttt 73
||||||||||||||||||||||||||
Sbjct: 59 tctaacactgtctggtaacgatgttt 84
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgttt 73
||||||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatgttt 74
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>27087_eca-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>27798_mml-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 51 tctaacactgtctggtaacgatgtt 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 15 catcttaccggacagtgctggatt 38
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>31528_oan-mir-200a:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 64 tctaacactgtctggtaacgatgtt 88
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>32788_rno-mir-200a:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 16 catcttaccggacagtgctggatt 39
>33035_rno-mir-3548:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 51 tctaacactgtctggtaacgatgtt 27
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 87 catcttaccggacagtgctggatt 64
>33278_bta-mir-200a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgtt 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggatt 34
||||||||| ||||||||||||||
Sbjct: 14 catcttaccggacagtgctggatt 37
>25328_csa-mir-141:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatg 70
||||||||||||||||||| ||||
Sbjct: 45 ttctaacactgtctggtaaagatg 68
>27389_mdo-mir-141:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatg 70
||||||||||||||||||| ||||
Sbjct: 38 ttctaacactgtctggtaaagatg 61
>24694_bfl-mir-200c:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatg 70
|||||||||||||||||| ||||
Sbjct: 56 tctaacactgtctggtaatgatg 78
>24837_cin-mir-141:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatg 70
|||||||||||||||||| ||||
Sbjct: 38 tctaacactgtctggtaaagatg 60
