miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AANH01002761.1/40227-40150 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 127 bits (64), Expect = 2e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 4 caggatccatcttacccgacagtgctggattgtactactgttgttctaacactgtctggt 63
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 caggatccatcttacccgacagtgctggattgtacgtctgttgttctaacactgtctggt 62
Query: 64 aacgatgttttctggg 79
|||||||||| |||||
Sbjct: 63 aacgatgtttcctggg 78
>RF00241;mir-8;BAAE01261092.1/898-975 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 93.7 bits (47), Expect = 3e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 5 aggatccatcttacccgacagtgctggattgtactactgttgttctaacactgtctggta 64
||||||||||||||| ||||||| |||| ||||| |||||| |||||||||||||||||
Sbjct: 4 aggatccatcttacctgacagtgatggactgtacagctgttgctctaacactgtctggta 63
Query: 65 acgatgttttctggg 79
||||||||| |||||
Sbjct: 64 acgatgtttcctggg 78
>RF00241;mir-8;CR925720.9/83600-83676 7955:Danio rerio (zebrafish)
Length = 77
Score = 79.8 bits (40), Expect = 5e-15
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 ccatcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgat 69
|||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct: 9 ccatcttaccggacagtgctggactgtataactgtt-ttctaacactgtctggtaacgat 67
Query: 70 gttt 73
||||
Sbjct: 68 gttt 71
>RF00241;mir-8;CU855953.4/78055-77979 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 11 catcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgatg 70
||||||||| ||||||||| | ||| | |||| ||||||||||||||||||||||||||
Sbjct: 10 catcttacctgacagtgcttggctgttc-actgatgttctaacactgtctggtaacgatg 68
>RF00241;mir-8;AADN02040853.1/32451-32527 9031:Gallus gallus
(chicken)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatgttt 73
|||||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatgttt 71
>RF00241;mir-8;AAVX01056733.1/885-961 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatgttt 73
|||||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatgttt 71
>RF00241;mir-8;AAWZ01036826.1/12431-12507 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 ttctaacactgtctggtaacgatgtt 72
||||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatgtt 70
>RF00241;mir-8;AAPN01278104.1/1392-1318 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 44 tctaacactgtctggtaacgatgtt 68
>RF00241;mir-8;AALT01163752.1/983-908 42254:Sorex araneus
(European shrew)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 45 tctaacactgtctggtaacgatgtt 69
>RF00241;mir-8;AANN01836629.1/1372-1445 9365:Erinaceus europaeus
(western European hedgehog)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 43 tctaacactgtctggtaacgatgtt 67
>RF00241;mir-8;ABRQ01306924.1/1769-1693 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatgtt 72
|||||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatgtt 70
>RF00241;mir-8;AAGW01121226.1/219-144 9986:Oryctolagus cuniculus
(rabbit)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tctaacactgtctggtaacgatg 70
|||||||||||||||||||||||
Sbjct: 45 tctaacactgtctggtaacgatg 67
