miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;BAAE01261092.1/748-823 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 119 bits (60), Expect = 5e-27
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 10 ctccatcttacgaggcagcattggatatcatcactttctctaatactgcctggtaatgat 69
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 ctccatcttacgaggcagcattggatatcatccctttctctaatactgcctggtaatgat 66
Query: 70 gatg 73
||||
Sbjct: 67 gatg 70
>RF00241;mir-8;CR925720.9/83468-83543 7955:Danio rerio (zebrafish)
Length = 76
Score = 109 bits (55), Expect = 5e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 9 tctccatcttacgaggcagcattggatatcatcactttctctaatactgcctggtaatga 68
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 6 tctccatcttacgaggcagcattggatttcattactttttctaatactgcctggtaatga 65
Query: 69 tgatgat 75
|||||||
Sbjct: 66 tgatgat 72
>RF00241;mir-8;AADN02040853.1/30123-30198 9031:Gallus gallus
(chicken)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 12 ccatcttacgaggcagcattggatatcatcactttctctaatactgcctggtaatgatga 71
||||||||| ||||||||||||| | || ||| ||||||||||||||||||||||||
Sbjct: 9 ccatcttactgggcagcattggatgttctctgtttttctaatactgcctggtaatgatga 68
Query: 72 t 72
|
Sbjct: 69 t 69
>RF00241;mir-8;ABQF01059078.1/1300-1375 59729:Taeniopygia guttata
Length = 76
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 ctctaatactgcctggtaatgatgatga 74
||||||||||||||||||||||||||||
Sbjct: 44 ctctaatactgcctggtaatgatgatga 71
>RF00241;mir-8;AAVX01012727.1/1238-1163 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgatgat 75
||||||||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatgatgat 72
>RF00241;mir-8;AAPN01278105.1/215-140 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgatg 73
||||||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatgatg 70
>RF00241;mir-8;AAPY01315282.1/3050-2977 37347:Tupaia belangeri
(northern tree shrew)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 42 tctctaatactgcctggtaatgatga 67
>RF00241;mir-8;AAYZ01293785.1/5589-5517 9978:Ochotona princeps
(American pika)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatga 71
||||||||||||||||||||||||||
Sbjct: 41 tctctaatactgcctggtaatgatga 66
>RF00241;mir-8;CU855953.4/78255-78183 7955:Danio rerio (zebrafish)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 ttctctaatactgcctggtaatgatg 70
||||||||||||||||||||||||||
Sbjct: 40 ttctctaatactgcctggtaatgatg 65
>RF00241;mir-8;AAGW01121226.1/669-596 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||||||||||||||
Sbjct: 42 tctctaatactgcctggtaatgatg 66
>RF00241;mir-8;ABRQ01306924.1/2734-2660 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 ctctaatactgcctggtaatgatga 71
|||||||||||||||||||||||||
Sbjct: 43 ctctaatactgcctggtaatgatga 67
>RF00982;mir-200;AACT01017089.1/11032-10948 51511:Ciona savignyi
Length = 85
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 taatactgcctggtaatgatgat 72
|||||||||||||||||||||||
Sbjct: 49 taatactgcctggtaatgatgat 71
>RF00241;mir-8;AAPE01343286.1/476-400 59463:Myotis lucifugus
(little brown bat)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 ctaatactgcctggtaatgatga 71
|||||||||||||||||||||||
Sbjct: 47 ctaatactgcctggtaatgatga 69
>RF00982;mir-200;AABS01001272.1/8331-8416 7719:Ciona intestinalis
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tctaatactgcctggtaatgatgat 72
|||||||||||||||||||| ||||
Sbjct: 48 tctaatactgcctggtaatggtgat 72
>RF00241;mir-8;AAFR03037717.1/371-448 13616:Monodelphis domestica
(gray short-tailed opossum)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 45 tctctaatactgccgggtaatgatg 69
>RF00241;mir-8;AY865826.1/65-141 9593:Gorilla gorilla (Western
Gorilla)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 44 tctctaatactgccgggtaatgatg 68
>RF00241;mir-8;ABRQ01038382.1/145-67 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tctctaatactgcctggtaatgatg 70
|||||||||||||| ||||||||||
Sbjct: 46 tctctaatactgccgggtaatgatg 70
