miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00696;mir-203;BAAE01000181.1/2185-2106 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 139 bits (70), Expect = 5e-33
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1 ctgattaagtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttagga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 ctgattaagtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttagga 66
Query: 61 ccacttgaccagtc 74
||||||||||||||
Sbjct: 67 ccacttgaccagtc 80
>RF00696;mir-203;CT027758.7/42576-42497 7955:Danio rerio
(zebrafish)
Length = 80
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccacttg 73
Query: 68 accag 72
|||||
Sbjct: 74 accag 78
>RF00696;mir-203;ABQO010581221.1/929-850 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccact 65
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctattaaaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AADN02003787.1/117406-117485 9031:Gallus gallus
(chicken)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccacttg 73
Query: 68 accag 72
|||||
Sbjct: 74 accag 78
>RF00696;mir-203;AAFR03013559.1/2925-3004 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccacttg 73
Query: 68 a 68
|
Sbjct: 74 a 74
>RF00696;mir-203;AAVX01626047.1/560-639 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 14 agtggttttcaacagttcaacagttctttattaacattgtgaaatgtttaggaccacttg 73
Query: 68 a 68
|
Sbjct: 74 a 74
>RF00696;mir-203;AAVX01234553.1/1127-1048 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14 agtggttctaatcagttcaacagttctctatcgaaattgtgaaatgtttaggaccacttg 73
Query: 68 acc 70
|||
Sbjct: 74 acc 76
>RF00696;mir-203;BX255913.8/25815-25737 7955:Danio rerio
(zebrafish)
Length = 79
Score = 65.9 bits (33), Expect = 6e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttct-tttgatgattgtgaaatgttcaggaccacttg 72
Query: 68 a 68
|
Sbjct: 73 a 73
>RF00696;mir-203;AAYZ01488695.1/188-267 9978:Ochotona princeps
(American pika)
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
||||||||| | ||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 14 agtggttcttagcagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactcg 73
Query: 68 acc 70
|||
Sbjct: 74 acc 76
>RF00696;mir-203;CAAB01000784.1/57207-57130 31033:Takifugu
rubripes
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 tgtgaaatgtttaggaccact 65
|||||||||||||||||||||
Sbjct: 49 tgtgaaatgtttaggaccact 69
