miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
           nigroviridis
          Length = 101

 Score =  168 bits (85), Expect = 8e-42
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13  tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 72

                                        
Query: 61  caaagggatgctcagctgtcaccactgac 89
           |||||||||||||||| ||||||||||||
Sbjct: 73  caaagggatgctcagccgtcaccactgac 101




>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
           (Japanese medaka)
          Length = 101

 Score =  168 bits (85), Expect = 8e-42
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 13  tgtgacctgtgggcttccctttgtcatcctatgcctggagcttggataaggcagggacag 72

                                        
Query: 61  caaagggatgctcagctgtcaccactgac 89
           |||||||||||||||||||||||||||||
Sbjct: 73  caaagggatgctcagctgtcaccactgac 101




>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 101

 Score =  147 bits (74), Expect = 3e-35
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                      
Query: 4  gacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacagcaa 63
          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gacctatgggcttccctttgtcatcctatgcctggagctcggataaggcagggacagcaa 75

                                
Query: 64 agggatgctcagctgtcaccac 85
          ||||||||||| ||||||||||
Sbjct: 76 agggatgctcaactgtcaccac 97




>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
          (chicken)
          Length = 102

 Score =  113 bits (57), Expect = 4e-25
 Identities = 76/81 (93%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
          |||||||||||||||||||||||||||||||||||||||| ||  | | |||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72

                               
Query: 60 gcaaagggatgctcagctgtc 80
          |||||||||||||||||||||
Sbjct: 73 gcaaagggatgctcagctgtc 93




>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
          carolinensis (green anole)
          Length = 102

 Score =  107 bits (54), Expect = 2e-23
 Identities = 73/78 (93%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  tgacctgtgggcttccctttgtcatcctatgcctggagctcggata-aggcagggacagc 61
          |||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 15 tgacctgtgggcttccctttgtcatcctatgcctggagatcgcagagaggcagggacagc 74

                            
Query: 62 aaagggatgctcagctgt 79
          |||||| |||||||||||
Sbjct: 75 aaaggggtgctcagctgt 92




>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 102

 Score =  105 bits (53), Expect = 1e-22
 Identities = 75/81 (92%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
          |||||||||||||||||||||||||||||||||||||||  || || |  ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggaca 72

                               
Query: 60 gcaaagggatgctcagctgtc 80
          |||||||||||||||||||||
Sbjct: 73 gcaaagggatgctcagctgtc 93




>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
          (cape rock hyrax)
          Length = 102

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 75/84 (89%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
          |||||||||||||||||||||||||||||| ||||| | |||| || |  ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggaca 72

                                  
Query: 60 gcaaagggatgctcagctgtcacc 83
          |||||||| ||||||| |||||||
Sbjct: 73 gcaaagggctgctcagttgtcacc 96




>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 101

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                      
Query: 2  gtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacagc 61
          ||||| ||||||||||||||||||||||| ||||| | |||| |||| ||||||||| ||
Sbjct: 14 gtgacttgtgggcttccctttgtcatcctttgcctagggctctgatagggcagggactgc 73

                                
Query: 62 aaagggatgctcagctgtcacc 83
          |||||| | ||||| |||||||
Sbjct: 74 aaaggggtactcagttgtcacc 95




>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
          (zebrafish)
          Length = 102

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                  
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggag 40
          |||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 tgtgacctgtggacttccctttgtcatcctatgcctggag 52




>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
          (ghost shark)
          Length = 102

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctgg 38
          ||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 tgtgacctgtgggtttccctttgtcatcctatgcctgg 50




>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 102

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
          |||||| ||||||||||||||||||||||| ||||| | |||  || |  ||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggctttgagtggggcagggaca 72

                          
Query: 60 gcaaagggatgctcag 75
          |||||||| |||||||
Sbjct: 73 gcaaaggggtgctcag 88




>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
          mouse)
          Length = 102

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcct 36
          |||||||||||||||||||||||||||||| |||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcct 48




>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
          orangutan)
          Length = 102

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 71/83 (85%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
          |||||| ||||| |||||||||||||||||  |||| | |||| ||  | ||||||||||
Sbjct: 13 tgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagggaca 72

                                 
Query: 60 gcaaagggatgctcagctgtcac 82
          |||||||| ||||||| ||||||
Sbjct: 73 gcaaaggggtgctcagttgtcac 95




>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
          (Japanese medaka)
          Length = 104

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 10 tgggcttccctttgtcatcctatgcctgga 39
          ||||||||||||||||||||||||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctgga 51




>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
          novemcinctus (nine-banded armadillo)
          Length = 101

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 4  gacctgtgggcttccctttgtcatcctatgcct 36
          ||||||||||||||||||||||||||| |||||
Sbjct: 16 gacctgtgggcttccctttgtcatcctttgcct 48




>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus
          (chicken)
          Length = 104

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctg 37
          ||||||| |||| ||||||||||||||||||||||||
Sbjct: 13 tgtgacccgtggacttccctttgtcatcctatgcctg 49




>RF00646;mir-204;AAPN01089717.1/13112-13213 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 102

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 62/72 (86%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 13 gcttccctttgtcatcctatgcctggagctc-ggataaggcagggacagcaaagggatgc 71
          |||||||||||||||||||||||||||  ||   ||  ||||||||||||||||||||| 
Sbjct: 25 gcttccctttgtcatcctatgcctggaagtcaaaatggggcagggacagcaaagggatga 84

                      
Query: 72 tcagctgtcacc 83
          ||| | ||||||
Sbjct: 85 tcaaccgtcacc 96




>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 102

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcct 36
          |||||| ||||||||||||||||||||||| |||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcct 48




>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 102

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  gtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaaaggg 67
          |||||||||||||||||||||| ||||| | | || ||  | ||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctttgcctagggttctgagcagggcagggacagcaaaggg 80

                  
Query: 68 atgctcag 75
           |||||||
Sbjct: 81 gtgctcag 88




>RF00646;mir-204;AADN02066720.1/35863-35790 9031:Gallus gallus
          (chicken)
          Length = 74

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 6  cctgtgggcttccctttgtcatcctatgcctg 37
          |||||| |||||||||||||||||||||||||
Sbjct: 1  cctgtgagcttccctttgtcatcctatgcctg 32




>RF00646;mir-204;CR450827.5/52029-51927 7955:Danio rerio
          (zebrafish)
          Length = 103

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 53/60 (88%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 tgggcttccctttgtcatcctatgcctggagct-cggataaggcagggacagcaaaggga 68
          |||| ||||||||||||||||||||||| || | | ||| |||| |||||||||||||||
Sbjct: 23 tgggtttccctttgtcatcctatgcctgcagttcctgatgaggctgggacagcaaaggga 82




>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 102

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctggag 40
          ||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 13 tgtgacccgtgggtttccctttgtcatcctttgcctggag 52




>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
          (ghost shark)
          Length = 104

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 10 tgggcttccctttgtcatcctatgcctg 37
          ||||||||||||||||||||||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctg 49




>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
          (zebra mbuna)
          Length = 104

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctgga 39
          |||||| | ||| ||||||||||||||||||||||||||
Sbjct: 13 tgtgacatatggacttccctttgtcatcctatgcctgga 51




>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 104

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 1  tgtgacctgtgggcttccctttgtcatcctatgcctgga 39
          |||||| | ||| ||||||||||||||||||||||||||
Sbjct: 13 tgtgacttatggccttccctttgtcatcctatgcctgga 51




>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 104

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 9  gtgggcttccctttgtcatcctatgcctg 37
          |||| ||||||||||||||||||||||||
Sbjct: 21 gtggacttccctttgtcatcctatgcctg 49




>RF00646;mir-204;CAAB01008029.1/2077-2179 31033:Takifugu rubripes
          Length = 103

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 3  tgacctgtgggcttccctttgtcatcctatgcctgga 39
          |||||| ||| ||||||||||| ||||||||||||||
Sbjct: 15 tgacctatggacttccctttgttatcctatgcctgga 51