miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 168 bits (85), Expect = 8e-42
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 72
Query: 61 caaagggatgctcagctgtcaccactgac 89
|||||||||||||||| ||||||||||||
Sbjct: 73 caaagggatgctcagccgtcaccactgac 101
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 168 bits (85), Expect = 8e-42
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagcttggataaggcagggacag 72
Query: 61 caaagggatgctcagctgtcaccactgac 89
|||||||||||||||||||||||||||||
Sbjct: 73 caaagggatgctcagctgtcaccactgac 101
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 147 bits (74), Expect = 3e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 4 gacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacagcaa 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 gacctatgggcttccctttgtcatcctatgcctggagctcggataaggcagggacagcaa 75
Query: 64 agggatgctcagctgtcaccac 85
||||||||||| ||||||||||
Sbjct: 76 agggatgctcaactgtcaccac 97
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 113 bits (57), Expect = 4e-25
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
Query: 60 gcaaagggatgctcagctgtc 80
|||||||||||||||||||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 107 bits (54), Expect = 2e-23
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 3 tgacctgtgggcttccctttgtcatcctatgcctggagctcggata-aggcagggacagc 61
|||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 15 tgacctgtgggcttccctttgtcatcctatgcctggagatcgcagagaggcagggacagc 74
Query: 62 aaagggatgctcagctgt 79
|||||| |||||||||||
Sbjct: 75 aaaggggtgctcagctgt 92
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 105 bits (53), Expect = 1e-22
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
||||||||||||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggaca 72
Query: 60 gcaaagggatgctcagctgtc 80
|||||||||||||||||||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 87.7 bits (44), Expect = 2e-17
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||||||||||||||||||||||||||| ||||| | |||| || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggaca 72
Query: 60 gcaaagggatgctcagctgtcacc 83
|||||||| ||||||| |||||||
Sbjct: 73 gcaaagggctgctcagttgtcacc 96
>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
(domestic guinea pig)
Length = 101
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 2 gtgacctgtgggcttccctttgtcatcctatgcctggagctcggataaggcagggacagc 61
||||| ||||||||||||||||||||||| ||||| | |||| |||| ||||||||| ||
Sbjct: 14 gtgacttgtgggcttccctttgtcatcctttgcctagggctctgatagggcagggactgc 73
Query: 62 aaagggatgctcagctgtcacc 83
|||||| | ||||| |||||||
Sbjct: 74 aaaggggtactcagttgtcacc 95
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggag 40
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 tgtgacctgtggacttccctttgtcatcctatgcctggag 52
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctgg 38
||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 tgtgacctgtgggtttccctttgtcatcctatgcctgg 50
>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||||||||||||||||||||| ||||| | ||| || | ||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggctttgagtggggcagggaca 72
Query: 60 gcaaagggatgctcag 75
|||||||| |||||||
Sbjct: 73 gcaaaggggtgctcag 88
>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
mouse)
Length = 102
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcct 36
|||||||||||||||||||||||||||||| |||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
orangutan)
Length = 102
Score = 61.9 bits (31), Expect = 1e-09
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
|||||| ||||| ||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 13 tgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagggaca 72
Query: 60 gcaaagggatgctcagctgtcac 82
|||||||| ||||||| ||||||
Sbjct: 73 gcaaaggggtgctcagttgtcac 95
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctatgcctgga 39
||||||||||||||||||||||||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctgga 51
>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 gacctgtgggcttccctttgtcatcctatgcct 36
||||||||||||||||||||||||||| |||||
Sbjct: 16 gacctgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus
(chicken)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctg 37
||||||| |||| ||||||||||||||||||||||||
Sbjct: 13 tgtgacccgtggacttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAPN01089717.1/13112-13213 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 gcttccctttgtcatcctatgcctggagctc-ggataaggcagggacagcaaagggatgc 71
||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 25 gcttccctttgtcatcctatgcctggaagtcaaaatggggcagggacagcaaagggatga 84
Query: 72 tcagctgtcacc 83
||| | ||||||
Sbjct: 85 tcaaccgtcacc 96
>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
(western European hedgehog)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcct 36
|||||| ||||||||||||||||||||||| |||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
cuniculus (rabbit)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaaaggg 67
|||||||||||||||||||||| ||||| | | || || | ||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctttgcctagggttctgagcagggcagggacagcaaaggg 80
Query: 68 atgctcag 75
|||||||
Sbjct: 81 gtgctcag 88
>RF00646;mir-204;AADN02066720.1/35863-35790 9031:Gallus gallus
(chicken)
Length = 74
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 cctgtgggcttccctttgtcatcctatgcctg 37
|||||| |||||||||||||||||||||||||
Sbjct: 1 cctgtgagcttccctttgtcatcctatgcctg 32
>RF00646;mir-204;CR450827.5/52029-51927 7955:Danio rerio
(zebrafish)
Length = 103
Score = 56.0 bits (28), Expect = 8e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctatgcctggagct-cggataaggcagggacagcaaaggga 68
|||| ||||||||||||||||||||||| || | | ||| |||| |||||||||||||||
Sbjct: 23 tgggtttccctttgtcatcctatgcctgcagttcctgatgaggctgggacagcaaaggga 82
>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggag 40
||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 13 tgtgacccgtgggtttccctttgtcatcctttgcctggag 52
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 tgggcttccctttgtcatcctatgcctg 37
||||||||||||||||||||||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctgga 39
|||||| | ||| ||||||||||||||||||||||||||
Sbjct: 13 tgtgacatatggacttccctttgtcatcctatgcctgga 51
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 tgtgacctgtgggcttccctttgtcatcctatgcctgga 39
|||||| | ||| ||||||||||||||||||||||||||
Sbjct: 13 tgtgacttatggccttccctttgtcatcctatgcctgga 51
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gtgggcttccctttgtcatcctatgcctg 37
|||| ||||||||||||||||||||||||
Sbjct: 21 gtggacttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CAAB01008029.1/2077-2179 31033:Takifugu rubripes
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 3 tgacctgtgggcttccctttgtcatcctatgcctgga 39
|||||| ||| ||||||||||| ||||||||||||||
Sbjct: 15 tgacctatggacttccctttgttatcctatgcctgga 51