miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34781_tni-mir-205:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 8 tatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagtg 67
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1 tatccttcattccaccggagtctgtaactgtttttaaccagatttcagtggtgtgaagtg 60
Query: 68 taagag 73
||||||
Sbjct: 61 taagag 66
>34363_dre-mir-205:mirbase
Length = 89
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 5 ttctatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaa 64
|||||||||||||||||||||||||||| | | || || |||||||||||||||||||
Sbjct: 14 ttctatccttcattccaccggagtctgtgtagttgttcaatcagatttcagtggtgtgaa 73
Query: 65 gtgta 69
|||||
Sbjct: 74 gtgta 78
>25997_gga-mir-205a:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 2e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagtgta 69
||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |
Sbjct: 22 tccttcattccaccggagtctgtct-cgtacctaaccagatttcagtggagtgaagcaca 80
Query: 70 agagacatgg 79
||||||||||
Sbjct: 81 agagacatgg 90
>26765_cfa-mir-205:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagt 66
||||||||||||||||||||||| | ||| |||||||||||||||| |||||||
Sbjct: 7 tccttcattccaccggagtctgtct-cgtacccaaccagatttcagtggagtgaagt 62
>27423_mdo-mir-205a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagtgta 69
||||||||||||||||||||||| | ||| ||| ||||||||||||| |||||| ||
Sbjct: 5 tccttcattccaccggagtctgtct-catatctaatcagatttcagtggagtgaagcata 63
Query: 70 agagacatg 78
|||| ||||
Sbjct: 64 agaggcatg 72
>33283_bta-mir-205:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagt 66
||||||||||||||||||||||| | ||| |||||||||||||||| |||||||
Sbjct: 7 tccttcattccaccggagtctgtct-cgtacccaaccagatttcagtggagtgaagt 62
>31531_oan-mir-205:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 9e-07
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaag 65
||||||||||||||||||||||| | ||| ||| ||||||||||||| ||||||
Sbjct: 31 tccttcattccaccggagtctgt-ttcgtacctaatcagatttcagtggagtgaag 85
>25523_pma-mir-205a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 10 tccttcattccaccggagtctgt 32
>25668_xla-mir-205:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 16 tccttcattccaccggagtctgt 38
>25827_xtr-mir-205a:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 16 tccttcattccaccggagtctgt 38
>27091_eca-mir-205:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 7 tccttcattccaccggagtctgt 29
>27518_age-mir-205:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>27583_lla-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>27802_mml-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>28233_mne-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>28329_ggo-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>28524_hsa-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>30117_ppa-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>30283_ptr-mir-205:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>30901_ppy-mir-205:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 34 tccttcattccaccggagtctgt 56
>31931_mmu-mir-205:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 7 tccttcattccaccggagtctgt 29
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 aaccagatttcagtggtgtgaag 65
|||||||||||||||| ||||||
Sbjct: 38 aaccagatttcagtggagtgaag 60
>32795_rno-mir-205:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 33 tccttcattccaccggagtctgt 55
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 aaccagatttcagtggtgtgaag 65
|||||||||||||||| ||||||
Sbjct: 64 aaccagatttcagtggagtgaag 86
>34035_ssc-mir-205:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 7 tccttcattccaccggagtctgt 29
>25524_pma-mir-205b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ccttcattccaccggagtctgt 32
||||||||||||||||||||||
Sbjct: 8 ccttcattccaccggagtctgt 29
