miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 tgtgttctatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tgtgttctatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtg 78
Query: 61 tgaagtgtaagagacatgg 79
|||||||||||||||||||
Sbjct: 79 tgaagtgtaagagacatgg 97
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 93.7 bits (47), Expect = 3e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 5 ttctatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaa 64
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 23 ttctgtccttcattccaccggagtctgtgcctgtatggaaccagatttcagtggtgtgaa 82
Query: 65 gtgtaagagacatgg 79
|||||| ||||||||
Sbjct: 83 gtgtaaaagacatgg 97
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 91.7 bits (46), Expect = 1e-18
Identities = 73/80 (91%), Gaps = 4/80 (5%)
Strand = Plus / Plus
Query: 1 tgtgttctatccttcattccaccggagtctgtatgtgtattta-accagatttcagtggt 59
|||||||| ||||||||||||||||||||||| ||| || | ||||||||||||||||
Sbjct: 15 tgtgttctgtccttcattccaccggagtctgtctgt---ttcacaccagatttcagtggt 71
Query: 60 gtgaagtgtaagagacatgg 79
||||||||||||||||||||
Sbjct: 72 gtgaagtgtaagagacatgg 91
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio
(zebrafish)
Length = 103
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 5 ttctatccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaa 64
|||||||||||||||||||||||||||| | | || || |||||||||||||||||||
Sbjct: 23 ttctatccttcattccaccggagtctgtgtagttgttcaatcagatttcagtggtgtgaa 82
Query: 65 gtgta 69
|||||
Sbjct: 83 gtgta 87
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagtgta 69
||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |
Sbjct: 27 tccttcattccaccggagtctgtct-cgtacctaaccagatttcagtggagtgaagcaca 85
Query: 70 agagacatgg 79
||||||||||
Sbjct: 86 agagacatgg 95
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 ttctatccttcattccaccggagtctgtat 34
||||||||||||||||||||||||||||||
Sbjct: 23 ttctatccttcattccaccggagtctgtat 52
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 ttctatccttcattccaccggagtctgt 32
||||||||||||||||||||||||||||
Sbjct: 23 ttctatccttcattccaccggagtctgt 50
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagtgta 69
||||||||||||||||||||||| | ||| ||| ||||||||||||| |||||| ||
Sbjct: 28 tccttcattccaccggagtctgtct-catatctaatcagatttcagtggagtgaagcata 86
Query: 70 agagacatgg 79
|||| |||||
Sbjct: 87 agaggcatgg 96
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagtgta 69
||||||||||||||||||||||| | ||| ||| ||||||||||||| |||||| |
Sbjct: 28 tccttcattccaccggagtctgtct-catatctaatcagatttcagtggagtgaagcaca 86
Query: 70 agagacatgg 79
||||||||||
Sbjct: 87 agagacatgg 96
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/56 (87%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaag 65
||||||||||||||||||||||| | || | |||||||||||||||| ||||||
Sbjct: 28 tccttcattccaccggagtctgtctctgca--caaccagatttcagtggagtgaag 81
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagt 66
||||||||||||||||||||||| | ||| |||||||||||||||| |||||||
Sbjct: 28 tccttcattccaccggagtctgtct-cgtacccaaccagatttcagtggagtgaagt 83
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia
guttata
Length = 101
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/56 (87%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaag 65
|||||||||||||||||||||| | | || ||||||||||||||||| ||||||
Sbjct: 28 tccttcattccaccggagtctg--tctctagctaaccagatttcagtggagtgaag 81
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus
(house mouse)
Length = 100
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 27 tccttcattccaccggagtctgt 49
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia
porcellus (domestic guinea pig)
Length = 100
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 27 tccttcattccaccggagtctgt 49
