miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;CAAB01000590.1/23908-23811 31033:Takifugu
rubripes
Length = 98
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tctaaaagcaggtgagccactgactaacgcacattgcgccagttgacagttccactgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctaaaagcaggtgagccactgactaacgcacattgcgccagttgacagttccactgtgc 60
Query: 61 gtgtgacagcggctaacctggttttgggaacgcttctg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtgacagcggctaacctggttttgggaacgcttctg 98
>RF00679;mir-210;BAAE01058508.1/297-393 8090:Oryzias latipes
(Japanese medaka)
Length = 97
Score = 123 bits (62), Expect = 4e-28
Identities = 84/90 (93%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tctaaaagcaggtgagccactgactaacgcacattgcgccagttgacagttccactgtgc 60
||||||||||||| |||||||||||||||||||||| || || ||||| ||||||||||
Sbjct: 1 tctaaaagcaggtaagccactgactaacgcacattgtgcgtgt-gacagatccactgtgc 59
Query: 61 gtgtgacagcggctaacctggttttgggaa 90
||||||||||||||||||||||||||||||
Sbjct: 60 gtgtgacagcggctaacctggttttgggaa 89
>RF00679;mir-210;AL928892.6/129366-129463 7955:Danio rerio
(zebrafish)
Length = 98
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 5 aaagcaggtgagccactgactaacgcacattgcgccagttgacagttccactgtgcgtgt 64
||||||||| |||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 5 aaagcaggtaagccactgactaacgcacattgcgcctattctccactccactgtgcgtgt 64
Query: 65 gacagcggctaacctggttttgg 87
|||||||||||||| | ||||||
Sbjct: 65 gacagcggctaaccagcttttgg 87
>RF00679;mir-210;AAVX01157710.1/252-349 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 4 aaaagcaggtgagccactgactaacgcacattgcgccagttgacagttccactgtgcgtg 63
||||||| |||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct: 4 aaaagcaagtgagccactgactaacgcacattgcgctgtgtttgaataccactgtgcgtg 63
Query: 64 tgacagcggctaac 77
||||||||||||||
Sbjct: 64 tgacagcggctaac 77
>RF00679;mir-210;AAWZ01009466.1/109964-109868 28377:Anolis
carolinensis (green anole)
Length = 97
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggctaacctggtttt 85
||||||||||||||||||||||||||||| ||||
Sbjct: 51 ccactgtgcgtgtgacagcggctaacctgctttt 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 agcaggtgagccactgactaacgcacattg 36
||||| ||||||||||||||||||||||||
Sbjct: 7 agcagatgagccactgactaacgcacattg 36
>RF00679;mir-210;AAFR03066236.1/16417-16509 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 61/69 (88%), Gaps = 7/69 (10%)
Strand = Plus / Plus
Query: 8 gcaggtgagccactgactaacgcacattgcgc-cagttgacagttccactgtgcgtgtga 66
||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 8 gcaggggagccactgactaacgcacattgcgctcag--gac----ccactgtgcgtgtga 61
Query: 67 cagcggcta 75
|||||||||
Sbjct: 62 cagcggcta 70
>RF00679;mir-210;ABRQ01325237.1/532-437 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 50 ccactgtgcgtgtgacagcggct 72
