miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;BAAF04037894.1/2420-2326 8090:Oryzias latipes
(Japanese medaka)
Length = 95
Score = 127 bits (64), Expect = 3e-29
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 2 gtcagcgcatcaacaccttggctctagactgcttactgctaaaaccgctcataagtacag 61
||||| ||| ||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 2 gtcagtgcaccaataccttggctctagactgcttactgctaaaagtgctccaaagtacag 61
Query: 62 taacagtctacagtcatggctactgacgcctg 93
||||||||||||||||||||||||||||||||
Sbjct: 62 taacagtctacagtcatggctactgacgcctg 93
>RF00662;mir-132;ABPM01043889.1/132-226 106582:Maylandia zebra
(zebra mbuna)
Length = 95
Score = 119 bits (60), Expect = 7e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 2 gtcagcgcatcaacaccttggctctagactgcttactgctaaaaccgctcataagtacag 61
||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 2 gtcagtgcatcaataccttggctctagactgcttactgctaaaactcctccaaagtacag 61
Query: 62 taacagtctacagtcatggctactgacg 89
||||||||||||| ||||||||||||||
Sbjct: 62 taacagtctacagacatggctactgacg 89
>RF00662;mir-132;AANH01000634.1/21971-22065 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 8 gcatcaacaccttggctctagactgcttactgctaaaaccgc-tcataagtacagtaaca 66
|||||| |||||||||| |||||||||||||||| | || | ||| | |||||||||||
Sbjct: 8 gcatcagcaccttggctttagactgcttactgcttatacagtgtcaca-gtacagtaaca 66
Query: 67 gtctacagtcatggctactgacgcctg 93
||||||||||||||||||||| |||||
Sbjct: 67 gtctacagtcatggctactgaagcctg 93
>RF00662;mir-132;BAAF04066384.1/1751-1845 8090:Oryzias latipes
(Japanese medaka)
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 8 gcatcaacaccttggctctagactgcttactgctaaaaccg-ctcataagtacagtaaca 66
|||||| |||||||||| |||||||||||||||| | || |||| | |||||||||||
Sbjct: 8 gcatcagcaccttggctttagactgcttactgcttatacaatctcaca-gtacagtaaca 66
Query: 67 gtctacagtcatggctactgacgcctg 93
||||||||||||||||||||| |||||
Sbjct: 67 gtctacagtcatggctactgaagcctg 93
>RF00662;mir-132;CAAK05007784.1/2841-2935 7955:Danio rerio
(zebrafish)
Length = 95
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 55 agtacagtaacagtctacagtcatggctactga 87
|||||||||||||||||||||||||||||||||
Sbjct: 55 agtacagtaacagtctacagtcatggctactga 87
>RF00662;mir-132;AAVX01172706.1/316-404 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 agtaacagtctacagtcatggctactga 87
||||||||||||||||||||||||||||
Sbjct: 54 agtaacagtctacagtcatggctactga 81
>RF00662;mir-132;ABRQ01002353.1/3673-3585 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 15 caccttggctctagactgcttactgc 40
