miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;BAAF04050285.1/305-216 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 ttggtaaaatctcagctggcaactgtgagtcgttcactagctgctctcacaatggcctct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ttggtgaaatctcagctggcaactgtgagtcgttcactagctgctctcacaatggcctct 69
Query: 61 gggattatgctaa 73
|||||||||||||
Sbjct: 70 gggattatgctaa 82
>RF00654;mir-216;BAAF04071571.1/4838-4755 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 aaatctcagctggcaactgtgagt 30
||||||||||||||||||||||||
Sbjct: 16 aaatctcagctggcaactgtgagt 39
>RF00654;mir-216;ABEP02005709.1/3618-3531 7739:Branchiostoma
floridae (Florida lancelet)
Length = 88
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgagtc 31
||||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgagtc 40
>RF00654;mir-216;BX321898.29/72134-72045 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgagt 30
|||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgagt 39
>RF00654;mir-216;AAVX01063793.1/485-397 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgagt 30
|||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgagt 39
>RF00654;mir-216;AAPN01112677.1/27856-27944 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;AALT01617626.1/3023-3113 42254:Sorex araneus
(European shrew)
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;AAHY01091760.1/5719-5631 10090:Mus musculus
(house mouse)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;AAGW01552079.1/8729-8641 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;AAIY01552317.1/295-382 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;ABRQ01364796.1/1315-1227 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;AADN02046841.1/23280-23195 9031:Gallus gallus
(chicken)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;AANH01011241.1/47022-46939 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 aatctcagctggcaactgtgag 29
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
