miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;CAAB01000324.1/12433-12520 31033:Takifugu
rubripes
Length = 88
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 tgactgtttaatctctgcaggcaactgtgatggtgttttatattctcacaatcacctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tgactgtttaatctctgcaggcaactgtgatggtgttttatattctcacaatcacctgga 67
Query: 61 gagattctgcagtttat 77
|||||||||||||||||
Sbjct: 68 gagattctgcagtttat 84
>RF00654;mir-216;AANH01005109.1/23387-23300 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 9 taatctctgcaggcaactgtgatggtgttttatattctcacaatcacctggagagattct 68
||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatggtgctttaaattctcacaatgacctggagagattct 75
Query: 69 gcagtt 74
||||||
Sbjct: 76 gcagtt 81
>RF00654;mir-216;BAAF04050285.1/958-872 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 93.7 bits (47), Expect = 3e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 9 taatctctgcaggcaactgtgatggtgttttatattctcacaatcacctggagagattct 68
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct: 16 taatctctgcaggcaactgtgatggtgatttc-attctcacaatcacctggagagatttt 74
Query: 69 gcagttt 75
|||||||
Sbjct: 75 gcagttt 81
>RF00654;mir-216;AACT01058314.1/9825-9745 51511:Ciona savignyi
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 taatctctgcaggcaactgtgatg 32
||||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatg 39
>RF00654;mir-216;BX321898.29/72434-72349 7955:Danio rerio
(zebrafish)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 taatctctgcaggcaactgtgatg 32
||||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatg 39
>RF00654;mir-216;BAAF04071571.1/5040-4954 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taatctctgcaggcaactgtga 30
||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtga 37
>RF00654;mir-216;AAVX01147466.1/944-1031 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taatctctgcaggcaactgtga 30
||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtga 37
