miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu rubripes
Length = 106
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 atgaagagccttcttgatgcggatgatactgcatcaggaactgattggctgatgcttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atgaagagccttcttgatgcggatgatactgcatcaggaactgattggctgatgcttttt 65
Query: 61 acccaacagtacctgatgcattgccttcagcattgaaaga 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acccaacagtacctgatgcattgccttcagcattgaaaga 105
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 99.6 bits (50), Expect = 7e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 16 gatgcggatgatactgcatcaggaactgattggctgatgctttttacccaacagtacctg 75
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 21 gatgcggatgatactgcatcaggaactgattggctgatgctcaaatgtcaacagtacctg 80
Query: 76 atgcattgccttcagcat 93
||||||||||||||||||
Sbjct: 81 atgcattgccttcagcat 98
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 21 ggatgatactgcatcaggaactgattggctgatgctttttacccaacagtacctgatgca 80
||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||
Sbjct: 24 ggatgatactgcatcaggaactgattggctgatactcatttgccaacagtacctggtgca 83
Query: 81 ttgccttcagcattgaaaga 100
|| |||||||||| ||||||
Sbjct: 84 ttaccttcagcatcgaaaga 103
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 24 tgatactgcatcaggaactgattggctgat 53
||||||||||||||||||||||||| ||||
Sbjct: 29 tgatactgcatcaggaactgattggatgat 58
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattgg 48
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 gatactgcatcaggaactgattg 47
|||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattg 52
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tactgcatcaggaactgattgg 48
||||||||||||||||||||||
Sbjct: 11 tactgcatcaggaactgattgg 32
