miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34788_tni-mir-218a-1:mirbase
Length = 83
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 cggctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgacatcacatggtt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 cggctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgaaatcacatggtt 60
Query: 61 ccgtcaagcgccagggaccgctg 83
|||||||||||||||||||||||
Sbjct: 61 ccgtcaagcgccagggaccgctg 83
>34375_dre-mir-218a-1:mirbase
Length = 83
Score = 81.8 bits (41), Expect = 7e-17
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 3 gctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgacatcacatggttcc 62
|||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 3 gctgtctcttgtgcttgatctaaccatgtgccgccgcctacacaagcctcacatggttcc 62
Query: 63 gtcaagcgccagggaccgctg 83
||||||| |||||||||||||
Sbjct: 63 gtcaagcaccagggaccgctg 83
>34641_fru-mir-218a-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggc 34
||||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtggc 34
>34789_tni-mir-218a-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggc 34
||||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtggc 34
>25531_pma-mir-218a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 cttgtgcttgatctaaccatgtg 32
|||||||||||||||||||||||
Sbjct: 12 cttgtgcttgatctaaccatgtg 34
>25532_pma-mir-218a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 cttgtgcttgatctaaccatgtg 32
|||||||||||||||||||||||
Sbjct: 12 cttgtgcttgatctaaccatgtg 34
>25837_xtr-mir-218-1:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 24 ttgtgcttgatctaaccatgtgg 46
>25838_xtr-mir-218-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 12 ttgtgcttgatctaaccatgtgg 34
>26007_gga-mir-218-1:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 24 ttgtgcttgatctaaccatgtgg 46
>26008_gga-mir-218-2:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 12 ttgtgcttgatctaaccatgtgg 34
>26514_tgu-mir-218-1:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtgg 33
>26515_tgu-mir-218-2:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtgg 33
>26778_cfa-mir-218-1:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatgtgg 23
>26779_cfa-mir-218-2:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatgtgg 23
>27102_eca-mir-218:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatgtgg 23
>27103_eca-mir-218-2:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatgtgg 23
>27432_mdo-mir-218:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 24 ttgtgcttgatctaaccatgtgg 46
>27520_age-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>27584_lla-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>27585_lla-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>27626_sla-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>27627_sla-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>27814_mml-mir-218-1:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 20 ttgtgcttgatctaaccatgtgg 42
>27815_mml-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>28238_mne-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>28239_mne-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>28334_ggo-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>28536_hsa-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>28537_hsa-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>30121_ppa-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>30122_ppa-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>30294_ptr-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>30295_ptr-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>30912_ppy-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>30913_ppy-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>31409_lca-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>31538_oan-mir-218:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 31 ttgtgcttgatctaaccatgtgg 53
>31539_oan-mir-218-2:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 12 ttgtgcttgatctaaccatgtgg 34
>31947_mmu-mir-218-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>32811_rno-mir-218a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>33295_bta-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgg 47
>33296_bta-mir-218-2:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 2 ttgtgcttgatctaaccatgtgg 24
>34043_ssc-mir-218:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtgg 33
>34044_ssc-mir-218b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtgg 33
>34376_dre-mir-218a-2:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 14 ttgtgcttgatctaaccatgtgg 36
>31946_mmu-mir-218-1:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtg 46
>32810_rno-mir-218a-1:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtg 46
>32812_rno-mir-218b:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 86 ttgtgcttgatctaaccatgtg 65
>25533_pma-mir-218b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatg 30
||||||||||||||||||||
Sbjct: 15 ttgtgcttgatctaaccatg 34
>34377_dre-mir-218b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatg 30
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
>34642_fru-mir-218b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatg 30
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
>34790_tni-mir-218b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatg 30
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
