miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 cggctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgacatcacatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 cggctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgacatcacatggtt 67
Query: 61 ccgtcaagcgccagggaccgctg 83
|||||||||||||||||||||||
Sbjct: 68 ccgtcaagcgccagggaccgctg 90
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 133 bits (67), Expect = 4e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 3 gctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgacatcacatggttcc 62
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 10 gctgtctcttgtgcttgatctaaccatgtggccccgccagttgtgacttcacatggttcc 69
Query: 63 gtcaagcgccagggaccgc 81
|||||||||||||||||||
Sbjct: 70 gtcaagcgccagggaccgc 88
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 3 gctgtctcttgtgcttgatctaaccatgtggccccgcctattgtgacatcacatggttcc 62
|||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct: 10 gctgtctcttgtgcttgatctaaccatgtgccgccgcctacacaagcctcacatggttcc 69
Query: 63 gtcaagcgccagggaccgctg 83
||||||| |||||||||||||
Sbjct: 70 gtcaagcaccagggaccgctg 90
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 cttgtgcttgatctaaccatgtggc 34
|||||||||||||||||||||||||
Sbjct: 17 cttgtgcttgatctaaccatgtggc 41
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggc 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggc 41
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggc 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggc 41
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtgg 33
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
