miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 ggttgttcctttgtgcttgatctaaccatgtggctgccgggttcttatagtggaacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggttgttcctttgtgcttgatctaaccatgtggctgccgggttcttatagtggaacatgg 67
Query: 61 ttctgtcaagcaccatggaacggc 84
||||||||||||||||||||||||
Sbjct: 68 ttctgtcaagcaccatggaacggc 91
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 129 bits (65), Expect = 6e-30
Identities = 81/85 (95%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 ggttgttcctttgtgcttgatctaaccatgtggctgccgggtt-cttatagtggaacatg 59
|||||||||||||||||||||||||||||||||||||| |||| || | |||||||||||
Sbjct: 8 ggttgttcctttgtgcttgatctaaccatgtggctgccaggttcctaaaagtggaacatg 67
Query: 60 gttctgtcaagcaccatggaacggc 84
|||||||||||||||||||||||||
Sbjct: 68 gttctgtcaagcaccatggaacggc 92
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 105 bits (53), Expect = 9e-23
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 4 tgttcctttgtgcttgatctaaccatgtggctgccgggttcttatagtggaacatggttc 63
||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||
Sbjct: 11 tgttcctttgtgcttgatctaaccatgtgtctgaacggttcctatagtaaaacatggttc 70
Query: 64 tgtcaagcaccatggaacggc 84
|||||||||||||||||||||
Sbjct: 71 tgtcaagcaccatggaacggc 91
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 62/72 (86%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggctgccgggttcttatagtggaacatggttctgtcaag 70
||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgcaaggtacgaataa---aacatggttctgtcaag 74
Query: 71 caccatggaacg 82
||||||||||||
Sbjct: 75 caccatggaacg 86
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 aacatggttctgtcaagcaccatggaacg 82
|||||||||||||||||||||||||||||
Sbjct: 58 aacatggttctgtcaagcaccatggaacg 86
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtgg 33
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 gaacatggttctgtcaagcaccatggaa 80
||||||||||||||||||||||| ||||
Sbjct: 57 gaacatggttctgtcaagcaccacggaa 84
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtgg 33
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ggaacatggttctgtcaagcacc 74
|||||||||||||||||||||||
Sbjct: 56 ggaacatggttctgtcaagcacc 78
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtgg 33
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 gaacatggttctgtcaagcaccatggaa 80
||||||||||||||||||||||||||||
Sbjct: 57 gaacatggttctgtcaagcaccatggaa 84
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtgg 33
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 acatggttctgtcaagcaccatggaa 80
||||||||||||||||||||||||||
Sbjct: 59 acatggttctgtcaagcaccatggaa 84
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ttcctttgtgcttgatctaaccatgtggc 34
|||| ||||||||||||||||||||||||
Sbjct: 13 ttcccttgtgcttgatctaaccatgtggc 41
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggc 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggc 41
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtggc 34
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggc 41
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcttgatctaaccatgtg 32
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
