miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00251;mir-219;ABPN01064052.1/58-131 163638:Rhamphochromis esox
Length = 74
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtgaaaattcaaatcctacccgagaattgtgcctggac 60
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtgaaatttcaaatccaacccgagaattgtgcctggac 65
Query: 61 atctgttgc 69
|||||||||
Sbjct: 66 atctgttgc 74
>RF00251;mir-219;AANH01012160.1/2138-2064 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtgaaaattcaaatccta-cccgagaattgtgcctgga 59
|||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtaaaatctcaaatgcaaacccgagaattgtgcctgga 65
Query: 60 catctgt 66
|||||||
Sbjct: 66 catctgt 72
>RF00251;mir-219;BAAE01000431.1/3148-3074 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtgaaaattcaaatcc-tacccgagaattgtgcctgga 59
||||||||||||||||||||||| | ||| || ||||| | ||| ||||||||| ||||
Sbjct: 6 tgattgtccaaacgcaattcttgagtaaaatccaatccgtccccaagaattgtgtatgga 65
Query: 60 catctgttgc 69
||||||||||
Sbjct: 66 catctgttgc 75
>RF00251;mir-219;BX088597.18/18564-18638 7955:Danio rerio
(zebrafish)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtgaaa 28
||||||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtgaaa 33
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 cgagaattgtgcctggacatctgttgc 69
|||||||||||||||||||||||||||
Sbjct: 49 cgagaattgtgcctggacatctgttgc 75
>RF00251;mir-219;AADN02026640.1/6422-6348 9031:Gallus gallus
(chicken)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;BX323065.6/59875-59803 7955:Danio rerio
(zebrafish)
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agaattgtgcctggacatctgttgc 69
|||||||||||||||||||||||||
Sbjct: 49 agaattgtgcctggacatctgttgc 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;FP067442.4/5562-5494 7955:Danio rerio (zebrafish)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;AJ506968.1/8189-8258 31033:Takifugu rubripes
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;AANH01001091.1/47038-46966 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;AANH01004623.1/138672-138748 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtgaaaa 29
||||||||||||||||||||||| |||||
Sbjct: 6 tgattgtccaaacgcaattcttgagaaaa 34
>RF00251;mir-219;BAAF04001368.1/1865-1938 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;BAAE01251032.1/4888-4958 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;BAAE01153842.1/2224-2151 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;ABJB010034680.1/676-609 6945:Ixodes scapularis
(black-legged tick)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtg 25
|||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgtg 30
>RF00251;mir-219;ABRQ01073340.1/6903-6975 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 ccgagaattgtgcctggacatctgt 66
|||||||||||| ||||||||||||
Sbjct: 46 ccgagaattgtggctggacatctgt 70
>RF00251;mir-219;AAWZ01042166.1/945-878 28377:Anolis carolinensis
(green anole)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;CAAB01001740.1/22605-22679 31033:Takifugu
rubripes
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgtgaaa 28
||||||||||||||||||||||| ||||
Sbjct: 6 tgattgtccaaacgcaattcttgagaaa 33
>RF00251;mir-219;ABEP02034803.1/1504-1571 7739:Branchiostoma
floridae (Florida lancelet)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AAZO01005883.1/1118-1050 121224:Pediculus humanus
corporis (human body louse)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;ABLF01000757.1/13275-13349 7029:Acyrthosiphon
pisum (pea aphid)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AAZX01004956.1/9666-9737 7425:Nasonia vitripennis
(jewel wasp)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AADG05004460.1/8340-8269 7460:Apis mellifera
(honey bee)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AAWU01002102.1/48923-48993 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AAGE02015776.1/56998-57072 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;ABKP02018537.1/25428-25503 377271:Anopheles
gambiae M
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AANI01017339.1/197168-197098 7244:Drosophila
virilis
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;AAJJ01000028.1/33047-32979 7070:Tribolium
castaneum (red flour beetle)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttgt 24
||||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttgt 29
>RF00251;mir-219;CR848045.10/89252-89178 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattcttg 23
|||||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattcttg 28
>RF00251;mir-219;AAFR03043752.1/856-788 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattct 21
|||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattct 26
>RF00251;mir-219;ABRO01040016.1/7191-7262 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgtccaaacgcaattct 21
|||||||||||||||||||||
Sbjct: 6 tgattgtccaaacgcaattct 26
