miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34794_tni-mir-222:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 2 cagttgctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagttgctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactg 60
Query: 62 ggtctctg 69
||||||||
Sbjct: 61 ggtctctg 68
>34382_dre-mir-222:mirbase
Length = 108
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 6 tgctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactgggtc 65
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 30 tgctcagtagtcagtgtagatcctgtgtcacaatcagcagctacatctggctactgggtc 89
Query: 66 tctg 69
||||
Sbjct: 90 tctg 93
>31542_oan-mir-222a:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 4e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactgggtct 66
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 27 gctcagtagtcagtgtagatcctgtattctaatcagcagctacatctggctactgggtct 86
Query: 67 ctg 69
|||
Sbjct: 87 ctg 89
>31952_mmu-mir-222:mirbase
Length = 79
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 tcagttgctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggcta 58
||||| ||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 4 tcagtggctcagtagccagtgtagatcctgtctttggtaatcagcagctacatctggcta 63
Query: 59 ctgggtctctg 69
|||||||||||
Sbjct: 64 ctgggtctctg 74
>32818_rno-mir-222:mirbase
Length = 103
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 tcagttgctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggcta 58
||||| ||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 17 tcagtggctcagtagccagtgtagatcctgtctttggtaatcagcagctacatctggcta 76
Query: 59 ctgggtctctg 69
|||||||||||
Sbjct: 77 ctgggtctctg 87
>25841_xtr-mir-222:mirbase
Length = 64
Score = 75.8 bits (38), Expect = 3e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtagcaatcagcagctacatctggctactgggtct 66
|||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 2 gctcagtaatcagtgtagatcctgtatatctgtcagcagctacatctggctactgggtct 61
Query: 67 ct 68
||
Sbjct: 62 ct 63
>27107_eca-mir-222:mirbase
Length = 110
Score = 75.8 bits (38), Expect = 3e-15
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtcttttgtaatcagcagctacatctggctactgggt 89
Query: 65 ctctg 69
|||||
Sbjct: 90 ctctg 94
>27820_mml-mir-222:mirbase
Length = 110
Score = 75.8 bits (38), Expect = 3e-15
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtagc--aatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctggctactgggt 89
Query: 65 ctctg 69
|||||
Sbjct: 90 ctctg 94
>28543_hsa-mir-222:mirbase
Length = 110
Score = 75.8 bits (38), Expect = 3e-15
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtagc--aatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctggctactgggt 89
Query: 65 ctctg 69
|||||
Sbjct: 90 ctctg 94
>30917_ppy-mir-222:mirbase
Length = 110
Score = 75.8 bits (38), Expect = 3e-15
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtagc--aatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctggctactgggt 89
Query: 65 ctctg 69
|||||
Sbjct: 90 ctctg 94
>26011_gga-mir-222-1:mirbase
Length = 98
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 65
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 19 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 78
Query: 66 tctg 69
||||
Sbjct: 79 tctg 82
>26012_gga-mir-222-2:mirbase
Length = 98
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 65
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 19 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 78
Query: 66 tctg 69
||||
Sbjct: 79 tctg 82
>26518_tgu-mir-222-1:mirbase
Length = 74
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 65
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 3 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 62
Query: 66 tctg 69
||||
Sbjct: 63 tctg 66
>26519_tgu-mir-222-2:mirbase
Length = 74
Score = 71.9 bits (36), Expect = 5e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgtag-caatcagcagctacatctggctactgggtc 65
||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 3 gctcagtagtcagtgtagattctgtctttacaatcagcagctacatctggctactgggtc 62
Query: 66 tctg 69
||||
Sbjct: 63 tctg 66
>27521_age-mir-222:mirbase
Length = 110
Score = 71.9 bits (36), Expect = 5e-14
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 1 tcagttgctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggcta 58
||||| ||||||||| ||||||||||||||| | | |||||| |||||||||||||||
Sbjct: 24 tcagtggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggcta 83
Query: 59 ctgggtctctg 69
|||||||||||
Sbjct: 84 ctgggtctctg 94
>26783_cfa-mir-222:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 8e-13
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
Query: 65 ctctg 69
|||||
Sbjct: 70 ctctg 74
>33302_bta-mir-222:mirbase
Length = 110
Score = 67.9 bits (34), Expect = 8e-13
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct: 30 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 89
Query: 65 ctctg 69
|||||
Sbjct: 90 ctctg 94
>34047_ssc-mir-222:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 8e-13
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 7 gctcagtaggcagtgtagatcctgtg--tagcaatcagcagctacatctggctactgggt 64
||||||||| ||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct: 12 gctcagtagccagtgtagatcctgtcatttgtaatcagtagctacatctggctactgggt 71
Query: 65 ctctg 69
|||||
Sbjct: 72 ctctg 76
>27435_mdo-mir-222a:mirbase
Length = 68
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 38 atcagcagctacatctggctactgggtctctg 69
||||||||||||||||||||||||||||||||
Sbjct: 21 atcagcagctacatctggctactgggtctctg 52
>25535_pma-mir-222:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 40 cagcagctacatctggctactgggtctctg 69
|||||||||||| || ||||||||||||||
Sbjct: 52 cagcagctacatttgactactgggtctctg 81
