miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00664;mir-223;CAAB01000001.1/273051-272942 31033:Takifugu
rubripes
Length = 110
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 acttagtgtatttgacaagctgttcttgacactctttatacgcgagtgtcagtttgtcaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 acttagtgtatttgacaagctgttcttgacactctttatacgcgagtgtcagtttgtcaa 81
Query: 62 ataccccaagtgaggtgtcacttgtctg 89
||||||||||||||||||||||||||||
Sbjct: 82 ataccccaagtgaggtgtcacttgtctg 109
>RF00664;mir-223;AANH01000582.1/391608-391499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 103 bits (52), Expect = 4e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 1 cacttagtgtatttgacaagctgttcttgacactctttatacgcgagtgtcagtttgtca 60
||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||
Sbjct: 21 cacttagtgtatttgacaagctgagttggacactctgtatctctgagtgtcagtttgtca 80
Query: 61 aataccccaagtgaggtgtcacttgtct 88
||||||||||||||||||||||||||||
Sbjct: 81 aataccccaagtgaggtgtcacttgtct 108
>RF00664;mir-223;BAAF04035315.1/6268-6159 8090:Oryzias latipes
(Japanese medaka)
Length = 110
Score = 101 bits (51), Expect = 1e-21
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 1 cacttagtgtatttgacaagctgttcttgacactctttatacgcgagtgtcagtttgtca 60
||||||||||||||||||||||| | |||||||| | | | ||||||||||||||||
Sbjct: 21 cacttagtgtatttgacaagctgagttggacactctatctctgtgagtgtcagtttgtca 80
Query: 61 aataccccaagtgaggtgtcacttgtc 87
|||||||||||||||||||||||||||
Sbjct: 81 aataccccaagtgaggtgtcacttgtc 107
>RF00664;mir-223;AAFR03059733.1/784-675 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtgagg 76
||||||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgagg 96
>RF00664;mir-223;ABQF01018329.1/6784-6677 59729:Taeniopygia
guttata
Length = 108
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtgagg 76
||||||||||||||||||||||||||||||||
Sbjct: 64 gagtgtcagtttgtcaaataccccaagtgagg 95
>RF00664;mir-223;AADN02013066.1/26830-26939 9031:Gallus gallus
(chicken)
Length = 110
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtgagg 76
||||||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtgagg 96
>RF00664;mir-223;AALT01652710.1/2269-2378 42254:Sorex araneus
(European shrew)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AANN01684196.1/3693-3802 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAQR01675055.1/2409-2518 30611:Otolemur garnettii
(small-eared galago)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AY866256.1/405-514 9544:Macaca mulatta (rhesus
monkey)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AL831708.9/47299-47408 10090:Mus musculus (house
mouse)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAKN02052886.1/11821-11930 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAIY01539231.1/5018-5127 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtg 73
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;AAPN01125420.1/2697-2806 9258:Ornithorhynchus
anatinus (platypus)
Length = 110
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 gagtgtcagtttgtcaaataccccaagtgagg 76
||||||||||||||||||||||| ||||||||
Sbjct: 67 gagtgtcagtttgtcaaataccctaagtgagg 98
>RF00664;mir-223;BX465863.11/57630-57739 7955:Danio rerio
(zebrafish)
Length = 110
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 gtgtcagtttgtcaaataccccaagtgagg 76
||||||||||||||||||||||||| ||||
Sbjct: 67 gtgtcagtttgtcaaataccccaagagagg 96
