miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00686;mir-338;CAAB01002765.1/7900-7981 31033:Takifugu rubripes
Length = 82
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggattctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatc 60
Query: 61 agtgattttgttgcgggggg 80
||||||||||||||||||||
Sbjct: 61 agtgattttgttgcgggggg 80
>RF00686;mir-338;AANH01004322.1/123577-123496 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 82
Score = 115 bits (58), Expect = 9e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 7 tccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagtgat 66
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct: 7 tccctgcaacaacatcctggtgctgcctgagtaattgtcaaaaactccagcatcagtgat 66
Query: 67 tttgttgcgggggg 80
||||||||||||||
Sbjct: 67 tttgttgcgggggg 80
>RF00686;mir-338;BX547935.12/10590-10671 7955:Danio rerio
(zebrafish)
Length = 82
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 12 gcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagtgattttgt 71
||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 12 gcaacaatatcctggtgctgcctgagtacatctcacagactccagcatcagtgattttgt 71
Query: 72 tgcgggggg 80
||| |||||
Sbjct: 72 tgccggggg 80
>RF00686;mir-338;BAAF04022903.1/15976-15895 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 14 aacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagtgattttgttg 73
||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14 aacaacatcctggtgctgcctgagtgtgtaatgcaaactccagcatcagtgattttgttg 73
Query: 74 cgggggg 80
| |||||
Sbjct: 74 ctggggg 80
>RF00686;mir-338;BX323027.8/66170-66089 7955:Danio rerio
(zebrafish)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 4 ttctccctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagt 63
||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||
Sbjct: 4 ttctccctgcaacaatctcctgatgctgcctgagtgtttttcttccactccagcatcagt 63
Query: 64 gattttgttgc 74
|||||||||||
Sbjct: 64 gattttgttgc 74
>RF00686;mir-338;BAAF04103498.1/7620-7539 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 9 cctgcaacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagtgattt 68
|||| ||||| |||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct: 9 cctgaaacaatatcctggtgctgcccgagtgcggctcacagactccagcatcagtgattt 68
Query: 69 tgttgc 74
||||||
Sbjct: 69 tgttgc 74
>RF00686;mir-338;BAAF04036435.1/2170-2253 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttgcgggggg 80
|||||||||||||||||||||||||| |||||
Sbjct: 51 aactccagcatcagtgattttgttgctggggg 82
>RF00686;mir-338;CT033796.7/14466-14548 7955:Danio rerio
(zebrafish)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 aaactccagcatcagtgattttgttgc 74
|||||||||||||||||||||||||||
Sbjct: 49 aaactccagcatcagtgattttgttgc 75
>RF00686;mir-338;AANN01126736.1/1031-1108 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttgc 74
||||||||||||||||||||||||||
Sbjct: 45 aactccagcatcagtgattttgttgc 70
>RF00686;mir-338;ABRO01103244.1/1456-1377 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 47 aactccagcatcagtgattttgttg 71
>RF00686;mir-338;ABRQ01133047.1/132-55 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttg 73
|||||||||||||||||||||||||
Sbjct: 45 aactccagcatcagtgattttgttg 69
>RF00686;mir-338;AAWZ01002449.1/77719-77800 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 13 caacaacatcctggtgctgcctgagtcactttcacaaactccagcatcagtgattttgtt 72
|||||| |||||||||||| ||||| | ||| | |||||||||||||||||||||||
Sbjct: 13 caacaatatcctggtgctgagtgagtggcactcaaagactccagcatcagtgattttgtt 72
Query: 73 g 73
|
Sbjct: 73 g 73
>RF00686;mir-338;CAAE01014705.1/537256-537337 99883:Tetraodon
nigroviridis
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttgc 74
|||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttgc 74
>RF00686;mir-338;AANH01012267.1/23040-22957 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttgc 74
|||||||||||||||||||||||||
Sbjct: 52 actccagcatcagtgattttgttgc 76
>RF00686;mir-338;AAFR03029132.1/115398-115317 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>RF00686;mir-338;AL953913.5/23199-23121 10090:Mus musculus (house
mouse)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 actccagcatcagtgattttgttg 73
||||||||||||||||||||||||
Sbjct: 47 actccagcatcagtgattttgttg 70
>RF00686;mir-338;AAVX01571211.1/489-569 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttgc 74
||||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttgc 73
>RF00686;mir-338;AAVX01041385.1/4416-4496 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttgc 74
||||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttgc 73
>RF00686;mir-338;ABQF01038321.1/45632-45552 59729:Taeniopygia
guttata
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 ctccagcatcagtgattttgttg 73
|||||||||||||||||||||||
Sbjct: 50 ctccagcatcagtgattttgttg 72
>RF00686;mir-338;CAAB01004517.1/3420-3502 31033:Takifugu rubripes
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aactccagcatcagtgattttgttgc 74
||||||||||| ||||||||||||||
Sbjct: 50 aactccagcattagtgattttgttgc 75
