miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34800_tni-mir-429:mirbase
Length = 87
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 cctgttgataggcgtcttaccagacatggttagatgtaattattgttgtctaatactgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cctgttgataggcgtcttaccagacatggttagatgtaattattgttgtctaatactgtc 62
Query: 61 tggtaatgccgtccat 76
||||||||||||||||
Sbjct: 63 tggtaatgccgtccat 78
>34400_dre-mir-429:mirbase
Length = 82
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 3 tgttgataggcgtcttaccagacatggttagatgtaattattgttgtctaatactgtctg 62
||||||| | |||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 3 tgttgatggacgtcttaccagacatggttagatgtaataacttgtgtctaatactgtctg 62
Query: 63 gtaatgccgtccat 76
||||||||||||||
Sbjct: 63 gtaatgccgtccat 76
>25860_xtr-mir-429:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 2e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 14 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgccgt 72
||||||||||||| |||||||| || ||| | | |||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacaaggttagatctagttactctcgtctaatactgtctggtaatgccgt 74
>31552_oan-mir-429:mirbase
Length = 112
Score = 65.9 bits (33), Expect = 4e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 cctgttgataggcgtcttaccagacatggttagatgtaattattgttgtctaatactgtc 60
|||| |||| || ||||||||||||| ||||||| | | |||| | |||||||||||||
Sbjct: 14 cctgctgattggtgtcttaccagacaaagttagatctgactattttcgtctaatactgtc 73
Query: 61 tggtaatgccgtc 73
|||||||||||||
Sbjct: 74 tggtaatgccgtc 86
>26843_cfa-mir-429:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 cctgttgataggcgtcttaccagacatggttagatgtaattattgttgtctaatactgtc 60
|||| |||| |||||||||||||||| |||||||| | | || ||||||||||||||
Sbjct: 3 cctgctgatgggcgtcttaccagacacggttagatctgggttctggtgtctaatactgtc 62
Query: 61 tggtaatgccgt 72
||||||||||||
Sbjct: 63 tggtaatgccgt 74
>32910_rno-mir-429:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 14 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgccgtc 73
|||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
Query: 74 cat 76
|||
Sbjct: 76 cat 78
>25673_xla-mir-429:mirbase
Length = 68
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
||||||||||||||||||||||||||||||
Sbjct: 39 tgtctaatactgtctggtaatgccgtccat 68
>27176_eca-mir-429:mirbase
Length = 67
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
||||||||||||||||||||||||||||||
Sbjct: 38 tgtctaatactgtctggtaatgccgtccat 67
>32069_mmu-mir-429:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
||||||||||||||||||||||||||||||
Sbjct: 47 tgtctaatactgtctggtaatgccgtccat 76
>33372_bta-mir-429:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
||||||||||||||||||||||||||||||
Sbjct: 48 tgtctaatactgtctggtaatgccgtccat 77
>34094_ssc-mir-429:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
||||||||||||||||||||||||||||||
Sbjct: 46 tgtctaatactgtctggtaatgccgtccat 75
>26026_gga-mir-429:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 14 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgccgtc 73
|||||||||| || ||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 15 gtcttaccaggcaaagttagatctagctatttctgtctaatactgtctggtaatgccgtc 74
>27450_mdo-mir-429:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 14 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgcc 70
||||||||||||| ||||||| | |||| ||||||||||||||||||||||||
Sbjct: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
>28649_hsa-mir-429:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ggcgtcttaccagacatggttaga 34
||||||||||||||||||||||||
Sbjct: 13 ggcgtcttaccagacatggttaga 36
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
|||||||||||||||||||| ||||||||
Sbjct: 47 tgtctaatactgtctggtaaaaccgtccat 76
>31003_ppy-mir-429:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ggcgtcttaccagacatggttaga 34
||||||||||||||||||||||||
Sbjct: 13 ggcgtcttaccagacatggttaga 36
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
|||||||||||||||||||| ||||||||
Sbjct: 47 tgtctaatactgtctggtaaaaccgtccat 76
>27902_mml-mir-429:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgccgtccat 76
|||||||||||||||||||| ||||||||
Sbjct: 47 tgtctaatactgtctggtaaaaccgtccat 76
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 gcgtcttaccagacatggttaga 34
||||||||||||||| |||||||
Sbjct: 14 gcgtcttaccagacacggttaga 36
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 tgtctaatactgtctggtaatgcc 70
|||||||||||| |||||||||||
Sbjct: 63 tgtctaatactgcctggtaatgcc 86
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 tctaatactgtctggtaatg 68
||||||||||||||||||||
Sbjct: 59 tctaatactgtctggtaatg 78
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ctaatactgtctggtaatg 68
|||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatg 76
