miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00712;mir-460;AJ550897.1/27759-27835 31033:Takifugu rubripes
Length = 77
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 cagttcctgcattgtacacactgtgcaaatcatttctggaagcacagcgcatacaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagttcctgcattgtacacactgtgcaaatcatttctggaagcacagcgcatacaatgtg 65
Query: 61 gatgctgtg 69
|||||||||
Sbjct: 66 gatgctgtg 74
>RF00712;mir-460;BAAF04038357.1/1620-1696 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 73.8 bits (37), Expect = 2e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 cagttcctgcattgtacacactgtgcaaatcatttctggaagcacagcgcatacaatgtg 60
||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 6 cagttcctgcattgtacacactgtgcatatatgttacataagcacagcgcatacaatgtg 65
Query: 61 gatgctgtg 69
|||||||||
Sbjct: 66 gatgctgtg 74
>RF00712;mir-460;AL929518.16/147724-147648 7955:Danio rerio
(zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgctgtg 69
||||||||||||||||||||||||||||
Sbjct: 47 gcacagcgcatacaatgtggatgctgtg 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tcctgcattgtacacactgtgc 26
||||||||||||||||||||||
Sbjct: 10 tcctgcattgtacacactgtgc 31
>RF00712;mir-460;AAWZ01036331.1/1691-1615 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgct 66
|||||||||||||||||||||||||
Sbjct: 47 gcacagcgcatacaatgtggatgct 71
>RF00712;mir-460;AADN02000191.1/14140-14216 9031:Gallus gallus
(chicken)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggatgctgt 68
|||||||||||||||||||||| ||||
Sbjct: 47 gcacagcgcatacaatgtggattctgt 73
>RF00712;mir-460;AAFR03030363.1/8341-8416 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 gcacagcgcatacaatgtggat 63
||||||||||||||||||||||
Sbjct: 46 gcacagcgcatacaatgtggat 67
