miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34658_ola-mir-430a-2:mirbase
          Length = 82

 Score =  147 bits (74), Expect = 1e-36
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggacatcaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60

                                
Query: 61 tgttggggtatttttggtgtcc 82
          |||||||||| |||||||||||
Sbjct: 61 tgttggggtaattttggtgtcc 82




>34659_ola-mir-430a-3:mirbase
          Length = 82

 Score =  147 bits (74), Expect = 1e-36
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggacatcaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60

                                
Query: 61 tgttggggtatttttggtgtcc 82
          |||||||||| |||||||||||
Sbjct: 61 tgttggggtaattttggtgtcc 82




>34660_ola-mir-430a-4:mirbase
          Length = 82

 Score =  147 bits (74), Expect = 1e-36
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggacatcaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60

                                
Query: 61 tgttggggtatttttggtgtcc 82
          |||||||||| |||||||||||
Sbjct: 61 tgttggggtaattttggtgtcc 82




>34662_ola-mir-430b-2:mirbase
          Length = 82

 Score =  143 bits (72), Expect = 2e-35
 Identities = 78/80 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1  ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctaca 60

                              
Query: 61 tgttggggtatttttggtgt 80
          |||||||||| |||||||||
Sbjct: 61 tgttggggtaattttggtgt 80




>34661_ola-mir-430b-1:mirbase
          Length = 82

 Score =  139 bits (70), Expect = 3e-34
 Identities = 79/82 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 1  ggacataaagatgaccttgacacaggcactgactttttcttctttgtagtaagtgctaca 60

                                
Query: 61 tgttggggtatttttggtgtcc 82
          |||||||||| |||||||||||
Sbjct: 61 tgttggggtaattttggtgtcc 82




>34664_ola-mir-430c-2:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                      
Query: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71

                       
Query: 69 tatttttggtgtc 81
          || | ||||||||
Sbjct: 72 tagtcttggtgtc 84




>34667_ola-mir-430c-5:mirbase
          Length = 88

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                      
Query: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71

                       
Query: 69 tatttttggtgtc 81
          || | ||||||||
Sbjct: 72 tagtcttggtgtc 84




>34665_ola-mir-430c-3:mirbase
          Length = 89

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                      
Query: 9  agatgaccttgacacaggcactgactctttcttctttgtagtaagtgctacttgttgggg 68
          |||||||||| ||| |||||||||||     ||||||| |||||||||||| ||||||||
Sbjct: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71

            
Query: 69 ta 70
          ||
Sbjct: 72 ta 73




>34669_ola-mir-430c-7:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 40 ttctttgtagtaagtgctacttgttggggtatttttggtgtc 81
          ||||||| |||||||||||| |||||||||| | ||||||||
Sbjct: 37 ttctttgcagtaagtgctacatgttggggtagtcttggtgtc 78




>34663_ola-mir-430c-1:mirbase
          Length = 86

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 41 tctttgtagtaagtgctacttgttggggtatttttggtgtc 81
          |||||| |||||||||||| |||||||||| | ||||||||
Sbjct: 42 tctttgcagtaagtgctacatgttggggtagtcttggtgtc 82




>34666_ola-mir-430c-4:mirbase
          Length = 97

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 41 tctttgtagtaagtgctacttgttggggtatttttggtgtc 81
          |||||| |||||||||||| |||||||||| | ||||||||
Sbjct: 51 tctttgcagtaagtgctacatgttggggtagtcttggtgtc 91




>34668_ola-mir-430c-6:mirbase
          Length = 95

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 40 ttctttgtagtaagtgctacttgttggggta 70
          ||||||| |||||||||||| ||||||||||
Sbjct: 48 ttctttgcagtaagtgctacatgttggggta 78




>34411_dre-mir-430a-18:mirbase
          Length = 94

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 49 gtaagtgctacttgttggggtattttt 75
          |||||||||| ||||||||||| ||||
Sbjct: 56 gtaagtgctatttgttggggtagtttt 82




>34412_dre-mir-430a-19:mirbase
          Length = 94

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 49 gtaagtgctacttgttggggtattttt 75
          |||||||||| ||||||||||| ||||
Sbjct: 56 gtaagtgctatttgttggggtagtttt 82