miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BAAE01232573.1/815-728 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctact 60
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9 ggacatcaagatgaccttgacacaggcactgactctttcttctttatagtaagtgctaca 68
Query: 61 tgttggggtatttttggtgt 80
|||||||||| |||||||||
Sbjct: 69 tgttggggtaattttggtgt 88
>RF01413;miR-430;BAAE01275909.1/49-129 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 ggacataaagatgaccttgacacaggcactgactctttct 40
|||||| ||||||| ||||||||||||||||||||||||
Sbjct: 9 ggacatcaagatgaatttgacacaggcactgactctttct 48
>RF01413;miR-430;BAAE01018229.1/497-418 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 ggacataaagatgaccttgacacaggcactgactctt 37
|||||| ||||||| |||||||||||||||||||||
Sbjct: 9 ggacatcaagatgaatttgacacaggcactgactctt 45
>RF01413;miR-430;CAAE01012407.1/29943-29853 99883:Tetraodon
nigroviridis
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agtaagtgctacttgttggggtattttt 75
||||||||||||||||||||||| ||||
Sbjct: 59 agtaagtgctacttgttggggtaatttt 86
>RF01413;miR-430;CAAE01012407.1/27170-27080 99883:Tetraodon
nigroviridis
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agtaagtgctacttgttggggtattttt 75
||||||||||||||||||||||| ||||
Sbjct: 59 agtaagtgctacttgttggggtaatttt 86
>RF01413;miR-430;CAAB01008374.1/5191-5101 31033:Takifugu rubripes
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 gtaagtgctacttgttggggtattttt 75
|||||||||||||||||||||| ||||
Sbjct: 60 gtaagtgctacttgttggggtactttt 86
