miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BAAE01232573.1/815-728 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctaca 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9 ggacatcaagatgaccttgacacaggcactgactctttcttctttatagtaagtgctaca 68
Query: 61 tgttggggtaattttggtgt 80
||||||||||||||||||||
Sbjct: 69 tgttggggtaattttggtgt 88
>RF01413;miR-430;BAAE01275909.1/49-129 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/80 (85%), Gaps = 7/80 (8%)
Strand = Plus / Plus
Query: 1 ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctaca 60
|||||| ||||||| |||||||||||||||||||||||| | ||||| |||||
Sbjct: 9 ggacatcaagatgaatttgacacaggcactgactctttctgc-------taagtactaca 61
Query: 61 tgttggggtaattttggtgt 80
||||||||||||||||||||
Sbjct: 62 tgttggggtaattttggtgt 81
>RF01413;miR-430;BAAE01018229.1/497-418 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 68/80 (85%), Gaps = 8/80 (10%)
Strand = Plus / Plus
Query: 1 ggacataaagatgaccttgacacaggcactgactctttcttctttgtagtaagtgctaca 60
|||||| ||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 9 ggacatcaagatgaatttgacacaggcactgac----tcttctttgtagta----gtaca 60
Query: 61 tgttggggtaattttggtgt 80
||||||||||||||||||||
Sbjct: 61 tgttggggtaattttggtgt 80
>RF01413;miR-430;CAAE01012407.1/29943-29853 99883:Tetraodon
nigroviridis
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agtaagtgctacatgttggggtaatttt 75
|||||||||||| |||||||||||||||
Sbjct: 59 agtaagtgctacttgttggggtaatttt 86
>RF01413;miR-430;CAAE01012407.1/27170-27080 99883:Tetraodon
nigroviridis
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agtaagtgctacatgttggggtaatttt 75
|||||||||||| |||||||||||||||
Sbjct: 59 agtaagtgctacttgttggggtaatttt 86
>RF01413;miR-430;BAAE01312757.1/678-765 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 50 taagtgctacatgttggggtaattttggtgt 80
||||||||||||||||||||| | |||||||
Sbjct: 58 taagtgctacatgttggggtagtcttggtgt 88
>RF01413;miR-430;BAAE01320161.1/245-158 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 catgttggggtaattttggtgt 80
||||||||||||||||||||||
Sbjct: 67 catgttggggtaattttggtgt 88
