miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BAAE01312757.1/678-765 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 2 tcagacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgcta 61
|||||||||||||||||||||||| ||||||||| |||| ||| |||||| |||||||||
Sbjct: 7 tcagacattcagatgaccttaacaaaggcactgatttgagtttgtttgcaataagtgcta 66
Query: 62 catgttggggtagtctttgtgt 83
||||||||||||||||| ||||
Sbjct: 67 catgttggggtagtcttggtgt 88
>RF01413;miR-430;BAAE01306502.1/488-571 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 109 bits (55), Expect = 6e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 2 tcagacattcagatgaccttaacataggcactgacttgaatttctttgcagtaagtgcta 61
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 7 tcagacattcagatgaccttaacatgggcactgacttgaatttgtttgcagtaagtgcta 66
Query: 62 cat 64
|||
Sbjct: 67 cat 69
>RF01413;miR-430;BAAE01232573.1/815-728 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 12 agatgaccttaacataggcactgacttgaatttctttgcagtaagtgctacatgttgggg 71
|||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct: 17 agatgaccttgacacaggcactgactctttcttctttatagtaagtgctacatgttgggg 76
Query: 72 ta 73
||
Sbjct: 77 ta 78
>RF01413;miR-430;ACDA01001276.1/512-421 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 cagtaagtgctacatgttgggg 71
||||||||||||||||||||||
Sbjct: 58 cagtaagtgctacatgttgggg 79
